#!/usr/bin/env python # coding: utf-8 # In[1]: # In[1]: from clustergrammer_widget import * import process_CCLE net = Network() # In[2]: ds_df = process_CCLE.quick_downsample(num_clusts=100) # In[3]: ds_df.shape # In[ ]: # In[18]: net.load_file('../proc_data/inst_ds.txt') ccle = net.export_df() net.dat['mat'].shape # In[14]: net.filter_N_top('row', 2000, rank_type='var') net.normalize(axis='row', norm_type='zscore', keep_orig=True) # In[15]: net.dat['mat'].shape # In[16]: net.make_clust() # In[17]: clustergrammer_widget(network=net.widget()) # In[20]: # In[ ]: