#!/usr/bin/env python
# coding: utf-8

# <!--NOTEBOOK_HEADER-->
# *This notebook contains material from [PyRosetta](https://RosettaCommons.github.io/PyRosetta.notebooks);
# content is available [on Github](https://github.com/RosettaCommons/PyRosetta.notebooks.git).*

# <!--NAVIGATION-->
# < [Command Reference](http://nbviewer.jupyter.org/github/RosettaCommons/PyRosetta.notebooks/blob/master/notebooks/A.00-Appendix-A.ipynb) | [Contents](toc.ipynb) | [Index](index.ipynb) | [Cleaning pdb files](http://nbviewer.jupyter.org/github/RosettaCommons/PyRosetta.notebooks/blob/master/notebooks/C.00-Appendix-C.ipynb) ><p><a href="https://colab.research.google.com/github/RosettaCommons/PyRosetta.notebooks/blob/master/notebooks/B.00-Appendix-B.ipynb"><img align="left" src="https://colab.research.google.com/assets/colab-badge.svg" alt="Open in Colab" title="Open in Google Colaboratory"></a>

# # Residue Parameter Files

# Parameter files describing the chemical and structural properties of each residue is found in the PyRosetta package in the `database/chemical/residue_type_sets` directory.
# The full-atom residue parameters are stored in the `/fa_standard/residue_types` directory. As an example, the parameter file for threonine is shown below.

# In[1]:


from IPython.display import Image
Image('./Media/res-param-1.png',width='700')


# In[2]:


from IPython.display import Image
Image('./Media/res-param-2.png',width='700')


# The centroid residue parameters can be found in the `/centroid/residue_types` directory. The centroid parameter file for Threonine is shown below.

# In[3]:


from IPython.display import Image
Image('./Media/centroid-res-param.png',width='700')


# In[ ]:





# <!--NAVIGATION-->
# < [Command Reference](http://nbviewer.jupyter.org/github/RosettaCommons/PyRosetta.notebooks/blob/master/notebooks/A.00-Appendix-A.ipynb) | [Contents](toc.ipynb) | [Index](index.ipynb) | [Cleaning pdb files](http://nbviewer.jupyter.org/github/RosettaCommons/PyRosetta.notebooks/blob/master/notebooks/C.00-Appendix-C.ipynb) ><p><a href="https://colab.research.google.com/github/RosettaCommons/PyRosetta.notebooks/blob/master/notebooks/B.00-Appendix-B.ipynb"><img align="left" src="https://colab.research.google.com/assets/colab-badge.svg" alt="Open in Colab" title="Open in Google Colaboratory"></a>