#!/usr/bin/env python
# coding: utf-8

# <!--NOTEBOOK_HEADER-->
# *This notebook contains material from [PyRosetta](https://RosettaCommons.github.io/PyRosetta.notebooks);
# content is available [on Github](https://github.com/RosettaCommons/PyRosetta.notebooks.git).*

# <!--NAVIGATION-->
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# # Rosetta Energy Score Functions

# A basic function of Rosetta is calculating the energy or score of a biomolecule. Rosetta has a standard energy function for all-atom calculations as well as several scoring functions for low-resolution protein representations. See https://www.ncbi.nlm.nih.gov/pubmed/28430426 for a review on the all-atom score functions.
# 
# You can also tailor an energy function by including scoring terms of your choice with custom weights.

# **Chapter contributors:**
# 
# - Kathy Le (Johns Hopkins University) adapted this chapter from the [PyRosetta Workshops](https://www.amazon.com/PyRosetta-Interactive-Platform-Structure-Prediction-ebook/dp/B01N21DRY8) 
#     (J. J. Gray, S. Chaudhury, S. Lyskov, J. Labonte, 2017).

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# < [Visualization and `pyrosetta.distributed.viewer`](http://nbviewer.jupyter.org/github/RosettaCommons/PyRosetta.notebooks/blob/master/notebooks/02.09-Visualization-and-pyrosetta.distributed.viewer.ipynb) | [Contents](toc.ipynb) | [Index](index.ipynb) | [Score Function Basics](http://nbviewer.jupyter.org/github/RosettaCommons/PyRosetta.notebooks/blob/master/notebooks/03.01-Score-Function-Basics.ipynb) ><p><a href="https://colab.research.google.com/github/RosettaCommons/PyRosetta.notebooks/blob/master/notebooks/03.00-Rosetta-Energy-Score-Functions.ipynb"><img align="left" src="https://colab.research.google.com/assets/colab-badge.svg" alt="Open in Colab" title="Open in Google Colaboratory"></a>