%%bash
rm -rf ~/geog0111
cd ~ && git clone https://github.com/UCL-EO/geog0111.git
cd ~/geog0111
cd notebooks && tar xzf data/cacheData.tar.Z

%%bash

pip install virtualenv --quiet
mkdir -p ~/envs
virtualenv ~/envs/geog0111
source ~/envs/geog0111/bin/activate

%%bash
# delete unwanted packages
cd ~/geog0111
awk < environment.yml -F= '{print $1}' | sed 's/-//' | sed 's/ //g' | grep -v 'pip:' | \
      grep -v 'channels:' | grep -v 'dependencies:' | grep -v 'conda-forge' | \
      grep -v 'defaults' | grep -v '#' | grep -vi conda | grep -v libmambapy | \
      grep -vi gdal  | grep -v git  | grep -vi python | grep -v nomkl | \
      grep -vi matplotlib | grep -vi hdf5 | grep -vi libnetcdf > requirements.txt

# look for gdal, matplotlib, hdf5, libnetcdf, libmambapy versions outside this
# nomkl, python, git not needed

%%bash
source ~/envs/geog0111/bin/activate

cd ~/geog0111
pip install -r requirements.txt
#pip install GDAL==`ogrinfo --version | awk -F, '{print $1}' | awk '{print $2}'`


%%bash
# look for gdal, matplotlib, hdf5, libnetcdf, libmambapy versions outside this
# codes for gdal

# https://gis.stackexchange.com/questions/370736/installing-gdal-on-ubuntu-20-04-unmet-dependencies
sudo add-apt-repository ppa:ubuntugis/ppa
sudo apt-get update
sudo apt-get install gdal-bin
#sudo apt install libpq5=12.10-0ubuntu0.20.04.1
sudo apt install libpq-dev

ogrinfo --version
sudo apt-get install libgdal-dev
export CPLUS_INCLUDE_PATH=/usr/include/gdal
export C_INCLUDE_PATH=/usr/include/gdal
pip install GDAL==`ogrinfo --version | awk -F, '{print $1}' | awk '{print $2}'`

%%bash
# look for gdal, matplotlib, hdf5, libnetcdf, libmambapy versions outside this

source ~/envs/geog0111/bin/activate
pip install GDAL==`ogrinfo --version | awk -F, '{print $1}' | awk '{print $2}'`