#!/usr/bin/env python
# coding: utf-8

# # Other cell annotations
# 
# In this notebook, we upload cell type annotations assigned by our domain experts. These annotations were generated using markers and by interactive investigation of our .h5ad files.
# 
# As these are derived from our .h5ad files, we'll connect them to the HISE analysis chain by chaching those files and using `hisepy.upload.upload_files()`.

# In[1]:


import hisepy
from datetime import date


# In[2]:


in_file = '1eb6ca8c-b8ed-4968-b515-c954497441dc'
hise_res = hisepy.reader.cache_files([in_file])


# In[6]:


out_file = 'annotations/pbmc_ref_others_annotations_2024-02-29.csv'


# In[7]:


study_space_uuid = '64097865-486d-43b3-8f94-74994e0a72e0'
title = 'Other annotations {d}'.format(d = date.today())


# In[8]:


hisepy.upload.upload_files(
    files = [out_file],
    study_space_id = study_space_uuid,
    title = title,
    input_file_ids = [in_file]
)


# In[9]:


import session_info
session_info.show()


# In[ ]: