This notebook demonstrates how to convert Resources to JSON-LD and vice-versa. JSON-LD is a semantic-preserving JSON format allowing to provide identifiers and meaning to JSON keys and values by mean of an added '@context' object. Read the excellent JSON-LD documentation to learn more about this format.
A JSON-LD context can be assigned to a Resource in three ways by order of priority:
context: e.g.jane_resource.context="https://schema.org/docs/jsonldcontext.json"Model section of the forge configuration file: e.g.'''
Model:
name: RdfModel
origin: ...
source: ...
context:
iri: "https://schema.org/docs/jsonldcontext.json"
'''
from kgforge.core import KnowledgeGraphForge
A configuration file is needed in order to create a KnowledgeGraphForge session. A configuration can be generated using the notebook 00-Initialization.ipynb.
forge = KnowledgeGraphForge("../../configurations/forge.yml")
import json
from kgforge.core import Resource
def pp(x):
print(json.dumps(x, indent=4))
context = {
"ex": "http://example.org/",
"Person": "ex:Person",
"Organization": "ex:Organization",
"employer": "ex:employer",
"name": "ex:name"
}
jane = Resource(context=context, type="Person", name="Jane Doe")
forge.as_json(jane)
{'type': 'Person', 'name': 'Jane Doe'}
pp(forge.as_jsonld(jane))
{
"@context": {
"ex": "http://example.org/",
"Person": "ex:Person",
"Organization": "ex:Organization",
"employer": "ex:employer",
"name": "ex:name"
},
"@type": "Person",
"name": "Jane Doe"
}
pp(forge.as_jsonld(jane, form="expanded"))
{
"@type": "http://example.org/Person",
"http://example.org/name": "Jane Doe"
}
jane = Resource(context="https://schema.org/docs/jsonldcontext.json", type="Person", name="Jane Doe")
print(jane)
{
context: https://schema.org/docs/jsonldcontext.json
type: Person
name: Jane Doe
}
pp(forge.as_jsonld(jane))
{
"@context": "https://schema.org/docs/jsonldcontext.json",
"type": "Person",
"name": "Jane Doe"
}
The configured model provides a default context that will be used to create resources that do not have context provided.
jane = Resource(type="Person", name="Jane Doe")
print(jane)
{
type: Person
name: Jane Doe
}
pp(forge.as_jsonld(jane))
{
"@context": {
"@vocab": "https://neuroshapes.org/",
"AcquisitionAnnotation": {
"@id": "nsg:AcquisitionAnnotation"
},
"Activity": {
"@id": "prov:Activity"
},
"AffineLinearTransform": {
"@id": "nsg:AffineLinearTransform"
},
"Agent": {
"@id": "prov:Agent"
},
"Analysis": {
"@id": "nsg:Analysis"
},
"AnalysisConfiguration": {
"@id": "nsg:AnalysisConfiguration",
"@type": "@id"
},
"AnalysisReport": {
"@id": "nsg:AnalysisReport",
"@type": "@id"
},
"AnalysisResult": {
"@id": "nsg:AnalysisResult"
},
"AnnotatedSlice": {
"@id": "nsg:AnnotatedSlice"
},
"Annotation": {
"@id": "nsg:Annotation"
},
"AnnotationBody": {
"@id": "nsg:AnnotationBody"
},
"ApicalAnnotation": {
"@id": "nsg:ApicalAnnotation"
},
"AtlasConstruction": {
"@id": "nsg:AtlasConstruction"
},
"AtlasRelease": {
"@id": "nsg:AtlasRelease"
},
"AtlasSpatialReferenceSystem": {
"@id": "nsg:AtlasSpatialReferenceSystem"
},
"BluePyEfeFeatures": {
"@id": "nsg:BluePyEfeFeatures"
},
"BoundingBox": {
"@id": "nsg:BoundingBox"
},
"BoutonDensity": {
"@id": "nsg:BoutonDensity"
},
"BrainAtlasRelease": {
"@id": "nsg:BrainAtlasRelease"
},
"BrainAtlasSpatialReferenceSystem": {
"@id": "nsg:BrainAtlasSpatialReferenceSystem"
},
"BrainImaging": {
"@id": "nsg:BrainImaging"
},
"BrainLocation": {
"@id": "nsg:BrainLocation"
},
"BrainParcellationDataLayer": {
"@id": "nsg:BrainParcellationDataLayer"
},
"BrainParcellationMesh": {
"@id": "nsg:BrainParcellationMesh"
},
"BrainSlicing": {
"@id": "nsg:BrainSlicing"
},
"BrainTemplateDataLayer": {
"@id": "nsg:BrainTemplateDataLayer"
},
"CampaignAnalysis": {
"@id": "nsg:CampaignAnalysis",
"@type": "@id"
},
"Cell": {
"@id": "nsg:Cell"
},
"CellCounting": {
"@id": "nsg:CellCounting"
},
"CellDensity": {
"@id": "nsg:CellDensity"
},
"CellDensityDataLayer": {
"@id": "nsg:CellDensityDataLayer"
},
"CellPlacement": {
"@id": "nsg:CellPlacement"
},
"CellRecordSeries": {
"@id": "nsg:CellRecordSeries"
},
"CircuitCellProperties": {
"@id": "nsg:CircuitCellProperties"
},
"Class": {
"@id": "owl:Class"
},
"Collection": {
"@id": "prov:Collection"
},
"ComponentDimension": {
"@id": "nsg:ComponentDimension"
},
"Concept": {
"@id": "skos:Concept"
},
"ConceptScheme": {
"@id": "skos:ConceptScheme"
},
"Configuration": {
"@id": "nsg:Configuration"
},
"Contribution": {
"@id": "nsg:Contribution"
},
"DataDownload": {
"@id": "schema:DataDownload"
},
"Dataset": {
"@id": "schema:Dataset"
},
"DeformableTransform": {
"@id": "nsg:DeformableTransform"
},
"Density": {
"@id": "nsg:Density"
},
"Derivation": {
"@id": "prov:Derivation"
},
"DetailedCircuit": {
"@id": "nsg:DetailedCircuit"
},
"EModel": {
"@id": "nsg:EModel"
},
"EModelBuilding": {
"@id": "nsg:EModelBuilding"
},
"EModelRelease": {
"@id": "nsg:EModelRelease"
},
"EModelScript": {
"@id": "nsg:EModelScript"
},
"ETypeFeatureProtocol": {
"@id": "nsg:ETypeFeatureProtocol"
},
"EdgeCollection": {
"@id": "nsg:EdgeCollection"
},
"EmodelFeatureGeneration": {
"@id": "nsg:EmodelFeatureGeneration"
},
"EmptyCollection": {
"@id": "prov:EmptyCollection"
},
"Entity": {
"@id": "prov:Entity"
},
"ExperimentalActivity": {
"@id": "nsg:ExperimentalActivity"
},
"ExperimentalProtocol": {
"@id": "nsg:ExperimentalProtocol"
},
"FixationStainingMounting": {
"@id": "nsg:FixationStainingMounting"
},
"FixedStainedSlice": {
"@id": "nsg:FixedStainedSlice"
},
"GeneExpressionVolumetricDataLayer": {
"@id": "nsg:GeneExpressionVolumetricDataLayer"
},
"Generation": {
"@id": "prov:Generation"
},
"GliaCellDensity": {
"@id": "nsg:GliaCellDensity"
},
"HostCell": {
"@id": "nsg:HostCell"
},
"ImageStack": {
"@id": "nsg:ImageStack"
},
"ImageVolume": {
"@id": "nsg:ImageVolume"
},
"InVitroSliceReconstructedPatchedNeuron": {
"@id": "nsg:InVitroSliceReconstructedPatchedNeuron"
},
"InVitroSliceWholeCellPatchClampElectrophysiologyTrace": {
"@id": "nsg:InVitroSliceWholeCellPatchClampElectrophysiologyTrace"
},
"InVitroWholeBrainReconstructedNeuronMorphology": {
"@id": "nsg:InVitroWholeBrainReconstructedNeuronMorphology"
},
"IntraCellularSharpElectrode": {
"@id": "nsg:IntraCellularSharpElectrode"
},
"IntraCellularSharpElectrodeRecordedCell": {
"@id": "nsg:IntraCellularSharpElectrodeRecordedCell"
},
"IntraCellularSharpElectrodeRecordedCellCollection": {
"@id": "nsg:IntraCellularSharpElectrodeRecordedCellCollection"
},
"IntraCellularSharpElectrodeRecordedSlice": {
"@id": "nsg:IntraCellularSharpElectrodeRecordedSlice"
},
"Invalidation": {
"@id": "prov:Invalidation"
},
"IonChannelGene": {
"@id": "nsg:IonChannelGene"
},
"IonChannelMechanismRelease": {
"@id": "nsg:IonChannelMechanismRelease"
},
"LabeledCell": {
"@id": "nsg:LabeledCell"
},
"LabeledCellCollection": {
"@id": "nsg:LabeledCellCollection"
},
"LayerThickness": {
"@id": "nsg:LayerThickness"
},
"LinearTransform": {
"@id": "nsg:LinearTransform"
},
"MEModel": {
"@id": "nsg:MEModel"
},
"MEModelRelease": {
"@id": "nsg:MEModelRelease"
},
"Mesh": {
"@id": "nsg:Mesh"
},
"ModelInstance": {
"@id": "nsg:ModelInstance"
},
"ModelRelease": {
"@id": "nsg:ModelRelease"
},
"ModelReleaseIndex": {
"@id": "nsg:ModelReleaseIndex"
},
"ModelValidation": {
"@id": "nsg:ModelValidation"
},
"Morphology": {
"@id": "nsg:Morphology"
},
"MorphologyDiversification": {
"@id": "nsg:MorphologyDiversification"
},
"MorphologyMesh": {
"@id": "nsg:MorphologyMesh"
},
"MorphologyMeshGeneration": {
"@id": "nsg:MorphologyMeshGeneration"
},
"MorphologyOrientationDataLayer": {
"@id": "nsg:MorphologyOrientationDataLayer"
},
"MorphologyRelease": {
"@id": "nsg:MorphologyRelease"
},
"NISSLImageDataLayer": {
"@id": "nsg:NISSLImageDataLayer"
},
"NdRaster": {
"@id": "nsg:NdRaster"
},
"NeuronDensity": {
"@id": "nsg:NeuronDensity"
},
"NeuronMorphology": {
"@id": "nsg:NeuronMorphology"
},
"NeuronMorphologyReconstruction": {
"@id": "nsg:NeuronMorphologyReconstruction"
},
"NodeCollection": {
"@id": "nsg:NodeCollection"
},
"Ontology": {
"@id": "owl:Ontology"
},
"OntologyConversion": {
"@id": "nsg:OntologyConversion"
},
"Organization": {
"@id": "schema:Organization"
},
"PHDataLayer": {
"@id": "nsg:PHDataLayer"
},
"Parameter": {
"@id": "nsg:Parameter"
},
"ParcellationImageData": {
"@id": "nsg:ParcellationImageData"
},
"ParcellationLabel": {
"@id": "nsg:ParcellationLabel"
},
"ParcellationMeshGeneration": {
"@id": "nsg:ParcellationMeshGeneration"
},
"ParcellationOntology": {
"@id": "nsg:ParcellationOntology"
},
"ParcellationReconstruction": {
"@id": "nsg:ParcellationReconstruction"
},
"ParcellationVolume": {
"@id": "nsg:ParcellationVolume"
},
"PatchClamp": {
"@id": "nsg:PatchClamp"
},
"PatchedCell": {
"@id": "nsg:PatchedCell"
},
"PatchedCellCollection": {
"@id": "nsg:PatchedCellCollection"
},
"PatchedSlice": {
"@id": "nsg:PatchedSlice"
},
"Person": {
"@id": "schema:Person"
},
"Protocol": {
"@id": "nsg:Protocol"
},
"QuantitativeValue": {
"@id": "schema:QuantitativeValue"
},
"ReconstructedCell": {
"@id": "nsg:ReconstructedCell"
},
"ReconstructedCellFormatConversion": {
"@id": "nsg:ReconstructedCellFormatConversion"
},
"ReconstructedCellRelease": {
"@id": "nsg:ReconstructedCellRelease"
},
"ReconstructedCellReleaseGeneration": {
"@id": "nsg:ReconstructedCellReleaseGeneration"
},
"ReconstructedCellReleaseProcess": {
"@id": "nsg:ReconstructedCellReleaseProcess"
},
"ReconstructedNeuronMorphology": {
"@id": "nsg:ReconstructedNeuronMorphology"
},
"ReconstructedPatchedCell": {
"@id": "nsg:ReconstructedPatchedCell"
},
"ReconstructedWholeBrainCell": {
"@id": "nsg:ReconstructedWholeBrainCell"
},
"Reconstruction": {
"@id": "nsg:Reconstruction"
},
"ReconstructionCorrection": {
"@id": "nsg:ReconstructionCorrection"
},
"ReconstructionFromImage": {
"@id": "nsg:ReconstructionFromImage"
},
"RecordMeasure": {
"@id": "nsg:RecordMeasure"
},
"RecordSeries": {
"@id": "nsg:RecordSeries"
},
"RegionOfInterest": {
"@id": "nsg:RegionOfInterest"
},
"ResponseTrace": {
"@id": "nsg:ResponseTrace"
},
"RigidLinearTransform": {
"@id": "nsg:RigidLinearTransform"
},
"RotationalMatrix": {
"@id": "nsg:RotationalMatrix"
},
"SimWriterConfiguration": {
"@id": "nsg:SimWriterConfiguration",
"@type": "@id"
},
"SimplifiedCircuit": {
"@id": "nsg:SimplifiedCircuit"
},
"Simulation": {
"@id": "nsg:Simulation"
},
"SimulationCampaign": {
"@id": "nsg:SimulationCampaign",
"@type": "@id"
},
"SimulationTrace": {
"@id": "nsg:SimulationTrace"
},
"SingleCellSimulationTrace": {
"@id": "nsg:SingleCellSimulationTrace"
},
"SingleCellTraceGeneration": {
"@id": "nsg:SingleCellTraceGeneration"
},
"Slice": {
"@id": "nsg:Slice"
},
"SliceCollection": {
"@id": "nsg:SliceCollection"
},
"SoftwareAgent": {
"@id": "prov:SoftwareAgent"
},
"SpaceDimension": {
"@id": "nsg:SpaceDimension"
},
"SpatialIndex": {
"@id": "nsg:SpatialIndex"
},
"SpatialIndexDerivation": {
"@id": "nsg:SpatialIndexDerivation"
},
"StimulationTrace": {
"@id": "nsg:StimulationTrace"
},
"StimulusExperiment": {
"@id": "nsg:StimulusExperiment"
},
"SubCellularModel": {
"@id": "nsg:SubCellularModel"
},
"SubCellularModelScript": {
"@id": "nsg:SubCellularModelScript"
},
"Subject": {
"@id": "nsg:Subject"
},
"SubjectCollection": {
"@id": "nsg:SubjectCollection"
},
"SynapseRelease": {
"@id": "nsg:SynapseRelease"
},
"Target": {
"@id": "nsg:Target"
},
"TemplateImageData": {
"@id": "nsg:TemplateImageData"
},
"TemplateReconstruction": {
"@id": "nsg:TemplateReconstruction"
},
"TemplateVolume": {
"@id": "nsg:TemplateVolume"
},
"Thickness": {
"@id": "nsg:Thickness"
},
"Threshold": {
"@id": "nsg:Threshold"
},
"Trace": {
"@id": "nsg:Trace"
},
"TraceCollection": {
"@id": "nsg:TraceCollection"
},
"TraceFeature": {
"@id": "nsg:TraceFeature"
},
"TraceFeatureExtraction": {
"@id": "nsg:TraceFeatureExtraction"
},
"TraceGeneration": {
"@id": "nsg:TraceGeneration"
},
"Transfection": {
"@id": "nsg:Transfection"
},
"Transform": {
"@id": "nsg:Transform"
},
"Transformation": {
"@id": "nsg:Transformation"
},
"TwoPhotonImageDataLayer": {
"@id": "nsg:TwoPhotonImageDataLayer"
},
"Usage": {
"@id": "prov:Usage"
},
"ValidationResult": {
"@id": "nsg:ValidationResult"
},
"VariableReport": {
"@id": "nsg:VariableReport"
},
"VolumetricDataLayer": {
"@id": "nsg:VolumetricDataLayer"
},
"WholeCellPatchClamp": {
"@id": "nsg:WholeCellPatchClamp"
},
"WorkflowEngine": {
"@id": "nsg:WorkflowEngine"
},
"WorkflowExecution": {
"@id": "nsg:WorkflowExecution",
"@type": "@id"
},
"about": {
"@id": "schema:about",
"@type": "@id"
},
"activity": {
"@id": "prov:activity"
},
"activityType": {
"@id": "nsg:activityType"
},
"additionalName": {
"@id": "schema:additionalName"
},
"address": {
"@id": "schema:address"
},
"addressCountry": {
"@id": "schema:addressCountry"
},
"addressLocality": {
"@id": "schema:addressLocality"
},
"affiliation": {
"@id": "schema:affiliation"
},
"age": {
"@id": "nsg:age"
},
"agent": {
"@id": "prov:agent"
},
"algorithm": {
"@id": "schema:algorithm"
},
"altLabel": {
"@id": "skos:altLabel"
},
"alternateName": {
"@id": "schema:alternateName"
},
"alternateOf": {
"@id": "prov:alternateOf"
},
"analogToDigitalConverter": {
"@id": "nsg:analogToDigitalConverter"
},
"annotation": {
"@id": "nsg:annotation"
},
"annotationAngle": {
"@id": "nsg:annotationAngle"
},
"annotatorComment": {
"@id": "nsg:annotatorComment"
},
"atTime": {
"@id": "prov:atTime"
},
"atlasRelease": {
"@id": "nsg:atlasRelease"
},
"atlasSpatialReferenceSystem": {
"@id": "nsg:atlasSpatialReferenceSystem",
"@type": "@id"
},
"atlasVersion": {
"@id": "nsg:atlasVersion"
},
"atlas_id": {
"@id": "mba:atlas_id"
},
"author": {
"@id": "schema:author",
"@type": "@id"
},
"axonProjection": {
"@id": "nsg:axonProjection"
},
"bathSolution": {
"@id": "nsg:bathSolution"
},
"bestScore": {
"@id": "nsg:bestScore"
},
"birthDate": {
"@id": "schema:birthDate"
},
"boundary": {
"@id": "nsg:boundary"
},
"boundingBox": {
"@id": "nsg:boundingBox"
},
"brainLocation": {
"@id": "nsg:brainLocation"
},
"brainRegion": {
"@id": "nsg:brainRegion"
},
"brainTemplateDataLayer": {
"@id": "nsg:brainTemplateDataLayer"
},
"bufferEncoding": {
"@id": "nsg:bufferEncoding"
},
"byteOffset": {
"@id": "nsg:byteOffset"
},
"cellLibraryFile": {
"@id": "nsg:cellLibraryFile"
},
"cellLine": {
"@id": "nsg:cellLine"
},
"center": {
"@id": "nsg:center"
},
"channel": {
"@id": "nsg:channel"
},
"chlorideReversalPotential": {
"@id": "nsg:chlorideReversalPotential"
},
"circuitCellProperties": {
"@id": "nsg:circuitCellProperties"
},
"citation": {
"@id": "schema:citation"
},
"color_hex_triplet": {
"@id": "mba:color_hex_triplet"
},
"column": {
"@id": "nsg:column"
},
"comment": {
"@id": "rdfs:comment"
},
"compensationCurrent": {
"@id": "nsg:compensationCurrent"
},
"componentEncoding": {
"@id": "nsg:componentEncoding"
},
"compressionCorrection": {
"@id": "nsg:compressionCorrection"
},
"configuration": {
"@id": "nsg:configuration"
},
"conformsTo": {
"@id": "nsg:conformsTo"
},
"contentSize": {
"@id": "schema:contentSize"
},
"contentUrl": {
"@id": "schema:contentUrl",
"@type": "@id"
},
"contribution": {
"@id": "nsg:contribution"
},
"coordinatesInBrainAtlas": {
"@id": "nsg:coordinatesInBrainAtlas"
},
"coordinatesInSlice": {
"@id": "nsg:coordinatesInSlice"
},
"cuttingThickness": {
"@id": "nsg:cuttingThickness"
},
"dateCreated": {
"@id": "schema:dateCreated"
},
"dateModified": {
"@id": "schema:dateModified"
},
"dateOfSurgery": {
"@id": "nsg:dateOfSurgery"
},
"datePublished": {
"@id": "schema:datePublished"
},
"dc": "http://purl.org/dc/elements/1.1/",
"dcat": "http://www.w3.org/ns/dcat#",
"dcterms": "http://purl.org/dc/terms/",
"deathDate": {
"@id": "schema:deathDate"
},
"defines": {
"@id": "nsg:defines",
"@type": "@id"
},
"definition": {
"@id": "skos:definition"
},
"density": {
"@id": "nsg:density"
},
"derivation": {
"@id": "nsg:derivation"
},
"description": {
"@id": "schema:description"
},
"digest": {
"@id": "nsg:digest"
},
"digitalToAnalogConverter": {
"@id": "nsg:digitalToAnalogConverter"
},
"dimension": {
"@id": "nsg:dimension",
"@container": "@list"
},
"disease": {
"@id": "nsg:disease"
},
"diseaseModel": {
"@id": "nsg:diseaseModel"
},
"distance": {
"@id": "schema:distance"
},
"distanceToBoundary": {
"@id": "nsg:distanceToBoundary"
},
"distribution": {
"@id": "schema:distribution"
},
"doi": {
"@id": "nsg:doi"
},
"drug": {
"@id": "schema:drug"
},
"eCode": {
"@id": "nsg:eCode"
},
"eModel": {
"@id": "nsg:eModel"
},
"eType": {
"@id": "nsg:eType"
},
"edgeCollection": {
"@id": "nsg:edgeCollection"
},
"edgePopulation": {
"@id": "nsg:edgePopulation"
},
"electrodeNumber": {
"@id": "nsg:electrodeNumber"
},
"electrodeResistance": {
"@id": "nsg:electrodeResistance"
},
"email": {
"@id": "schema:email"
},
"emodelIndex": {
"@id": "nsg:emodelIndex"
},
"emodelRelease": {
"@id": "nsg:emodelRelease"
},
"encodingFormat": {
"@id": "schema:encodingFormat"
},
"endMembranePotential": {
"@id": "nsg:endMembranePotential"
},
"endedAtTime": {
"@id": "prov:endedAtTime"
},
"endianness": {
"@id": "nsg:endianness"
},
"entity": {
"@id": "prov:entity"
},
"experimentalCell": {
"@id": "nsg:experimentalCell"
},
"familyName": {
"@id": "schema:familyName"
},
"faxNumber": {
"@id": "schema:faxNumber"
},
"featureExtractionConfiguration": {
"@id": "nsg:featureExtractionConfiguration"
},
"features": {
"@id": "nsg:features"
},
"fileExtension": {
"@id": "nsg:fileExtension"
},
"first": {
"@id": "rdf:first"
},
"firstRow": {
"@id": "nsg:firstRow"
},
"fixationMethod": {
"@id": "nsg:fixationMethod"
},
"fixedSliceHeight": {
"@id": "nsg:fixedSliceHeight"
},
"fixedSliceWidth": {
"@id": "nsg:fixedSliceWidth"
},
"gain": {
"@id": "nsg:gain"
},
"gene": {
"@id": "nsg:gene"
},
"generated": {
"@id": "prov:generated"
},
"generation": {
"@id": "nsg:generation"
},
"geometry": {
"@id": "nsg:geometry"
},
"geometryParameter": {
"@id": "nsg:geometryParameter"
},
"givenName": {
"@id": "schema:givenName"
},
"graph_order": {
"@id": "mba:graph_order"
},
"hadActivity": {
"@id": "prov:hadActivity"
},
"hadMember": {
"@id": "prov:hadMember"
},
"hadPlan": {
"@id": "prov:hadPlan"
},
"hadProtocol": {
"@id": "nsg:hadProtocol"
},
"hadRole": {
"@id": "prov:hadRole"
},
"hadUsage": {
"@id": "prov:hadUsage"
},
"hasApicalDendrite": {
"@id": "nsg:hasApicalDendrite"
},
"hasAxon": {
"@id": "nsg:hasAxon"
},
"hasBasalDendrite": {
"@id": "nsg:hasBasalDendrite"
},
"hasBody": {
"@id": "nsg:hasBody"
},
"hasPart": {
"@id": "schema:hasPart",
"@type": "@id"
},
"hasSelector": {
"@id": "nsg:hasSelector"
},
"hasSoma": {
"@id": "nsg:hasSoma"
},
"hasSource": {
"@id": "nsg:hasSource"
},
"hasTarget": {
"@id": "nsg:hasTarget"
},
"heightAnatomicalDirection": {
"@id": "nsg:heightAnatomicalDirection"
},
"heightResolution": {
"@id": "nsg:heightResolution"
},
"hemisphere": {
"@id": "nsg:hemisphere"
},
"hemisphere_id": {
"@id": "mba:hemisphere_id"
},
"hypampThreshold": {
"@id": "nsg:hypampThreshold"
},
"identifier": {
"@id": "schema:identifier"
},
"image": {
"@id": "schema:image"
},
"imageDirection": {
"@id": "nsg:imageDirection"
},
"imageModality": {
"@id": "nsg:imageModality"
},
"imageOrigin": {
"@id": "nsg:imageOrigin"
},
"imageVolume": {
"@id": "nsg:imageVolume"
},
"imagingMethod": {
"@id": "nsg:imagingMethod"
},
"imports": {
"@id": "owl:imports"
},
"inScheme": {
"@id": "skos:inScheme"
},
"index": {
"@id": "nsg:index"
},
"inputResistance": {
"@id": "nsg:inputResistance"
},
"invalidation": {
"@id": "nsg:invalidation"
},
"ionChannelGene": {
"@id": "nsg:ionChannelGene"
},
"isDefinedBy": {
"@id": "rdfs:isDefinedBy",
"@type": "@id"
},
"isPartOf": {
"@id": "schema:isPartOf",
"@type": "@id"
},
"isRegisteredIn": {
"@id": "nsg:isRegisteredIn"
},
"keywords": {
"@id": "schema:keywords"
},
"label": {
"@id": "rdfs:label"
},
"labelingCompound": {
"@id": "nsg:labelingCompound"
},
"language": {
"@id": "schema:language"
},
"layer": {
"@id": "nsg:layer"
},
"license": {
"@id": "schema:license"
},
"liquidJunctionPotential": {
"@id": "nsg:liquidJunctionPotential"
},
"location": {
"@id": "nsg:location"
},
"locationInSlice": {
"@id": "nsg:locationInSlice"
},
"longitudinalAxis": {
"@id": "nsg:longitudinalAxis"
},
"lowerPoint": {
"@id": "nsg:lowerPoint"
},
"mType": {
"@id": "nsg:mType"
},
"MType": {
"@id": "nsg:MType"
},
"CellPositions": {
"@id": "nsg:CellPositions"
},
"mainModelScript": {
"@id": "nsg:mainModelScript"
},
"materials": {
"@id": "nsg:materials"
},
"maxValue": {
"@id": "schema:maxValue"
},
"mba": "http://api.brain-map.org/api/v2/data/Structure/",
"measuredHoldingPotential": {
"@id": "nsg:measuredHoldingPotential"
},
"memodelIndex": {
"@id": "nsg:memodelIndex"
},
"memodelRelease": {
"@id": "nsg:memodelRelease"
},
"minValue": {
"@id": "schema:minValue"
},
"modelOf": {
"@id": "nsg:modelOf"
},
"modelScript": {
"@id": "nsg:modelScript"
},
"morphology": {
"@id": "nsg:morphology"
},
"morphologyIndex": {
"@id": "nsg:morphologyIndex"
},
"morphologyRelease": {
"@id": "nsg:morphologyRelease"
},
"mountingMedia": {
"@id": "nsg:mountingMedia"
},
"name": {
"@id": "schema:name"
},
"nodeCollection": {
"@id": "nsg:nodeCollection"
},
"normalizedScore": {
"@id": "nsg:normalizedScore"
},
"notation": {
"@id": "skos:notation"
},
"note": {
"@id": "skos:note"
},
"nsg": "https://neuroshapes.org/",
"numberOfRecords": {
"@id": "nsg:numberOfRecords"
},
"numberOfSlices": {
"@id": "nsg:numberOfSlices"
},
"objectOfStudy": {
"@id": "nsg:objectOfStudy"
},
"objectiveMagnification": {
"@id": "nsg:objectiveMagnification"
},
"objectiveType": {
"@id": "nsg:objectiveType"
},
"orientation": {
"@id": "nsg:orientation"
},
"origin": {
"@id": "nsg:origin"
},
"owl": "http://www.w3.org/2002/07/owl#",
"parameter": {
"@id": "nsg:parameter"
},
"parcellationOntology": {
"@id": "nsg:parcellationOntology"
},
"parcellationVolume": {
"@id": "nsg:parcellationVolume"
},
"parentOrganization": {
"@id": "schema:parentOrganization"
},
"period": {
"@id": "nsg:period"
},
"pipetteNumber": {
"@id": "nsg:pipetteNumber"
},
"pipetteResistance": {
"@id": "nsg:pipetteResistance"
},
"polygon": {
"@id": "schema:polygon"
},
"positionInLayer": {
"@id": "nsg:positionInLayer"
},
"postSynaptic": {
"@id": "nsg:postSynaptic"
},
"postalCode": {
"@id": "schema:postalCode"
},
"preSynaptic": {
"@id": "nsg:preSynaptic"
},
"prefLabel": {
"@id": "skos:prefLabel"
},
"projectName": {
"@id": "nsg:projectName"
},
"properties": {
"@id": "nsg:properties"
},
"propertyID": {
"@id": "schema:propertyID"
},
"prov": "http://www.w3.org/ns/prov#",
"providerExperimentId": {
"@id": "nsg:providerExperimentId"
},
"providerExperimentName": {
"@id": "nsg:providerExperimentName"
},
"putativeEtype": {
"@id": "nsg:putativeEtype"
},
"putativeMType": {
"@id": "nsg:putativeMType"
},
"qualifiedAssociation": {
"@id": "prov:qualifiedAssociation"
},
"qualifiedGeneration": {
"@id": "prov:qualifiedGeneration"
},
"qualifiedUsage": {
"@id": "prov:qualifiedUsage"
},
"quality": {
"@id": "nsg:quality"
},
"radius": {
"@id": "nsg:radius"
},
"rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#",
"rdfs": "http://www.w3.org/2000/01/rdf-schema#",
"reagentLinearFormula": {
"@id": "nsg:reagentLinearFormula"
},
"reagentMolarWeight": {
"@id": "nsg:reagentMolarWeight"
},
"reagentName": {
"@id": "nsg:reagentName"
},
"reagentVendor": {
"@id": "nsg:reagentVendor"
},
"reconstructable": {
"@id": "nsg:reconstructable"
},
"reconstructionRequested": {
"@id": "nsg:reconstructionRequested"
},
"recordMeasure": {
"@id": "nsg:recordMeasure",
"@container": "@list"
},
"releaseDate": {
"@id": "schema:releaseDate"
},
"repetition": {
"@id": "nsg:repetition"
},
"repetitions": {
"@id": "schema:repetitions"
},
"resolution": {
"@id": "nsg:resolution"
},
"rest": {
"@id": "rdf:rest"
},
"row": {
"@id": "nsg:row"
},
"sType": {
"@id": "nsg:sType",
"@type": "@id"
},
"sameAs": {
"@id": "schema:sameAs"
},
"sampleType": {
"@id": "nsg:sampleType"
},
"scale": {
"@id": "nsg:scale"
},
"schema": "http://schema.org/",
"score": {
"@id": "nsg:score"
},
"sealResistance": {
"@id": "nsg:sealResistance"
},
"secondRow": {
"@id": "nsg:secondRow"
},
"series": {
"@id": "nsg:series"
},
"seriesResistance": {
"@id": "nsg:seriesResistance"
},
"sex": {
"@id": "nsg:sex"
},
"sh": "http://www.w3.org/ns/shacl#",
"shsh": "http://www.w3.org/ns/shacl-shacl#",
"size": {
"@id": "schema:size"
},
"skos": "http://www.w3.org/2004/02/skos/core#",
"sku": {
"@id": "schema:sku"
},
"sliceHeight": {
"@id": "nsg:sliceHeight"
},
"sliceInterval": {
"@id": "nsg:sliceInterval"
},
"sliceIntervalValue": {
"@id": "nsg:sliceIntervalValue"
},
"sliceResolution": {
"@id": "nsg:sliceResolution"
},
"sliceWidth": {
"@id": "nsg:sliceWidth"
},
"slicingAngle": {
"@id": "nsg:slicingAngle"
},
"slicingPlane": {
"@id": "nsg:slicingPlane"
},
"solution": {
"@id": "nsg:solution"
},
"somaReconstructionType": {
"@id": "nsg:somaReconstructionType"
},
"source": {
"@id": "nsg:source"
},
"spatialCellName": {
"@id": "nsg:spatialCellName"
},
"spatialIndex": {
"@id": "nsg:spatialIndex"
},
"spatialReferenceSystem": {
"@id": "nsg:spatialReferenceSystem"
},
"species": {
"@id": "nsg:species"
},
"st_level": {
"@id": "mba:st_level"
},
"stackAnatomicalDirection": {
"@id": "nsg:stackAnatomicalDirection"
},
"stain": {
"@id": "nsg:stain"
},
"startMembranePotential": {
"@id": "nsg:startMembranePotential"
},
"startedAtTime": {
"@id": "prov:startedAtTime"
},
"statistic": {
"@id": "nsg:statistic"
},
"status": {
"@id": "nsg:status"
},
"steps": {
"@id": "nsg:steps"
},
"stimuliToExperimentMap": {
"@id": "nsg:stimuliToExperimentMap"
},
"stimulus": {
"@id": "nsg:stimulus"
},
"stimulusType": {
"@id": "nsg:stimulusType"
},
"store": {
"@id": "nsg:store"
},
"strain": {
"@id": "nsg:strain"
},
"streetAddress": {
"@id": "schema:streetAddress"
},
"subCellularMechanism": {
"@id": "nsg:subCellularMechanism"
},
"subCellularModel": {
"@id": "nsg:subCellularModel"
},
"subClassOf": {
"@id": "rdfs:subClassOf",
"@type": "@id"
},
"subject": {
"@id": "nsg:subject"
},
"sweep": {
"@id": "nsg:sweep"
},
"synapse": {
"@id": "nsg:synapse"
},
"synapseRelease": {
"@id": "nsg:synapseRelease"
},
"target": {
"@id": "nsg:target"
},
"targetHoldingPotential": {
"@id": "nsg:targetHoldingPotential"
},
"task": {
"@id": "nsg:task"
},
"telephone": {
"@id": "schema:telephone"
},
"temperature": {
"@id": "nsg:temperature"
},
"templateVolume": {
"@id": "nsg:templateVolume"
},
"thickness": {
"@id": "nsg:thickness"
},
"thirdRow": {
"@id": "nsg:thirdRow"
},
"timeStep": {
"@id": "nsg:timeStep"
},
"title": {
"@id": "schema:title"
},
"topConceptOf": {
"@id": "skos:topConceptOf"
},
"transgenic": {
"@id": "nsg:transgenic"
},
"treatment": {
"@id": "nsg:treatment"
},
"type": {
"@id": "rdf:type"
},
"uberon": "http://purl.obolibrary.org/obo/UBERON_",
"unitCode": {
"@id": "schema:unitCode"
},
"upperPoint": {
"@id": "nsg:upperPoint"
},
"url": {
"@id": "schema:url",
"@type": "@id"
},
"used": {
"@id": "prov:used"
},
"value": {
"@id": "schema:value"
},
"valueX": {
"@id": "nsg:valueX"
},
"valueY": {
"@id": "nsg:valueY"
},
"valueZ": {
"@id": "nsg:valueZ"
},
"vann": "http://purl.org/vocab/vann/",
"variable": {
"@id": "nsg:variable"
},
"vendor": {
"@id": "nsg:vendor"
},
"version": {
"@id": "schema:version"
},
"view2d": {
"@id": "nsg:view2d"
},
"view3d": {
"@id": "nsg:view3d"
},
"void": "http://rdfs.org/ns/void#",
"volumeDimension": {
"@id": "nsg:volumeDimension"
},
"voxelResolution": {
"@id": "nsg:voxelResolution"
},
"voxelType": {
"@id": "nsg:voxelType"
},
"warning": {
"@id": "nsg:warning"
},
"wasAssociatedWith": {
"@id": "prov:wasAssociatedWith"
},
"wasAttributedTo": {
"@id": "prov:wasAttributedTo"
},
"wasDerivedFrom": {
"@id": "prov:wasDerivedFrom"
},
"wasGeneratedBy": {
"@id": "prov:wasGeneratedBy"
},
"wasInfluencedBy": {
"@id": "prov:wasInfluencedBy"
},
"wasInformedBy": {
"@id": "prov:wasInformedBy"
},
"wasRevisionOf": {
"@id": "prov:wasRevisionOf"
},
"wasStartedBy": {
"@id": "prov:wasStartedBy"
},
"washOut": {
"@id": "nsg:washOut"
},
"weight": {
"@id": "schema:weight"
},
"widthAnatomicalDirection": {
"@id": "nsg:widthAnatomicalDirection"
},
"widthResolution": {
"@id": "nsg:widthResolution"
},
"worldMatrix": {
"@id": "nsg:worldMatrix",
"@container": "@list"
},
"xml": "http://www.w3.org/XML/1998/namespace",
"xsd": "http://www.w3.org/2001/XMLSchema#"
},
"@type": "Person",
"name": "Jane Doe"
}
pp(forge.as_jsonld(jane, form="expanded"))
{
"@type": "http://schema.org/Person",
"http://schema.org/name": "Jane Doe"
}
It is possible to use a context that is available in the Store when configured.
jane = Resource(context="https://bbp.neuroshapes.org", type="Person", name="Jane Doe")
print(jane)
{
context: https://bbp.neuroshapes.org
type: Person
name: Jane Doe
}
Since this context is not locally resolvable the json-ld conversion will fail.
pp(forge.as_jsonld(jane))
<action> _resource_context <error> ValueError: https://bbp.neuroshapes.org is not resolvable null
pp(forge.as_jsonld(jane, form="expanded"))
<action> _resource_context <error> ValueError: https://bbp.neuroshapes.org is not resolvable null
forge.register(jane)
<action> _register_one <succeeded> False <error> ValueError: https://bbp.neuroshapes.org is not resolvable
pp(forge.as_jsonld(jane, store_metadata=True))
<action> _resource_context <error> ValueError: https://bbp.neuroshapes.org is not resolvable null
john = Resource(context=context, type="Person", name="John Smith")
data = {
"@context": context,
"@type": "Person",
"name": "John Smith",
}
resource = forge.from_jsonld(data)
resource == john
True