In [1]:

from jbrowse_jupyter import launch, create

In [2]:

# creates an empty CircularGenome View JBrowseConfig
browser = create("CGV")

In [3]:

browser.set_assembly("https://jbrowse.org/genomes/hg19/fasta/hg19.fa.gz",aliases=["GRCh37"])
browser.add_track("https://s3.amazonaws.com/jbrowse.org/genomes/hg19/pacbio/hs37d5.HG002-SequelII-CCS.bnd-only.sv.vcf.gz", track_id="variantTest",overwrite=True)
browser.set_default_session(["variantTest"], False)
cgv_conf = browser.get_config()

In [5]:

launch(cgv_conf,dash_comp="CGV",height=400, port=8002)

In [ ]:

browser2 = create("CGV", genome="hg38")
launch(browser2.get_config(), dash_comp="CGV")