pyOpenMS is an open-source Python library for mass spectrometry, specifically for the analysis of proteomics and metabolomics data in Python. pyOpenMS implements a set of Python bindings to the OpenMS library for computational mass spectrometry and is available for Windows, Linux and macOS.
pyOpenMS provides functionality that is commonly used in computational mass spectrometry. The pyOpenMS package contains Python bindings for a large part of the OpenMS library for mass spectrometry based proteomics. It thus provides easy access to a feature-rich, open-source algorithm library for mass-spectrometry based proteomics analysis.
pyOpenMS facilitates the execution of common tasks in proteomics (and other fields of mass spectrometry) such as
Information about installing and using pyopenms.
user_guide/index
Documentation on modules, functions, classes of this package.
apidocs/index
Information about the community behind this package and how you can contribute.
community/index
C++ library <https://openms.de/documentation/html/index.html>