In [1]:
# import sys
# sys.path.append('/Users/alex/Documents/OpenPIV/openpiv-python')
import openpiv.tools
import openpiv.process
import openpiv.scaling
import numpy as np
import matplotlib.pyplot as plt
%matplotlib inline
/Users/alex/Library/Enthought/Canopy_32bit/User/lib/python2.7/site-packages/skimage/filter/__init__.py:6: skimage_deprecation: The `skimage.filter` module has been renamed to `skimage.filters`. This placeholder module will be removed in v0.13.
warn(skimage_deprecation('The `skimage.filter` module has been renamed '
In [2]:
frame_a = openpiv.tools.imread( '/Users/alex/Downloads/Movie1_Scene1_Import VIDEO_079.png' )
frame_b = openpiv.tools.imread( '/Users/alex/Downloads/Movie1_Scene1_Import VIDEO_080.png' )
In [3]:
fig,ax = plt.subplots(1,2)
ax[0].imshow(frame_a,cmap=plt.cm.gray)
ax[1].imshow(frame_b,cmap=plt.cm.gray)
Out[3]:
<matplotlib.image.AxesImage at 0xd1a2330>
In [4]:
winsize = 32 # pixels
searchsize = 64 # pixels, search in image B
overlap = 16 # pixels
dt = 1./30. # sec
u0, v0, sig2noise = openpiv.process.extended_search_area_piv( frame_a.astype(np.int32), frame_b.astype(np.int32), window_size=winsize, overlap=overlap, dt=dt, search_area_size=searchsize, sig2noise_method='peak2peak' )
In [5]:
x, y = openpiv.process.get_coordinates( image_size=frame_a.shape, window_size=winsize, overlap=overlap )
In [6]:
u1, v1, mask = openpiv.validation.sig2noise_val( u0, v0, sig2noise, threshold = 1.3 )
In [7]:
u2, v2 = openpiv.filters.replace_outliers( u1, v1, method='localmean', max_iter=10, kernel_size=2)
In [8]:
x, y, u3, v3 = openpiv.scaling.uniform(x, y, u2, v2, scaling_factor = 5.9039*30 )
In [9]:
openpiv.tools.save(x, y, u3, v3, mask, '/Users/alex/Downloads/Movie1_Scene1_Import VIDEO_080.txt' )
In [10]:
openpiv.tools.display_vector_field('/Users/alex/Downloads/Movie1_Scene1_Import VIDEO_080.txt', scale=50, width=0.0025)
In [ ]:
u0d, v0d = openpiv.pyprocess.piv(frame_a, frame_b, window_size=winsize, overlap=overlap, dt=dt, corr_method='fft', subpixel_method='gaussian', sig2noise_method=None, nfftx=None, nffty=None, width=2)
openpiv.tools.save(x, y, u0d, v0d, mask, 'tmp.txt' )
openpiv.tools.display_vector_field('tmp.txt', scale=5000, width=0.0025)
/Users/alex/Library/Enthought/Canopy_32bit/User/lib/python2.7/site-packages/openpiv/pyprocess.py:251: RuntimeWarning: divide by zero encountered in log subp_peak_position = (peak1_i + ( (log(cl)-log(cr) )/( 2*log(cl) - 4*log(c) + 2*log(cr) )), /Users/alex/Library/Enthought/Canopy_32bit/User/lib/python2.7/site-packages/openpiv/pyprocess.py:251: RuntimeWarning: invalid value encountered in double_scalars subp_peak_position = (peak1_i + ( (log(cl)-log(cr) )/( 2*log(cl) - 4*log(c) + 2*log(cr) )), /Users/alex/Library/Enthought/Canopy_32bit/User/lib/python2.7/site-packages/openpiv/pyprocess.py:252: RuntimeWarning: divide by zero encountered in log peak1_j + ( (log(cd)-log(cu) )/( 2*log(cd) - 4*log(c) + 2*log(cu) ))) /Users/alex/Library/Enthought/Canopy_32bit/User/lib/python2.7/site-packages/openpiv/pyprocess.py:252: RuntimeWarning: invalid value encountered in double_scalars peak1_j + ( (log(cd)-log(cu) )/( 2*log(cd) - 4*log(c) + 2*log(cu) )))
In [ ]:
u1d, v1d = openpiv.pyprocess.piv(frame_a, frame_b, window_size=winsize, overlap=overlap, dt=dt, corr_method='direct', subpixel_method='gaussian', sig2noise_method=None, nfftx=None, nffty=None, width=2)
openpiv.tools.save(x, y, u1d, v1d, mask, 'tmpdirect.txt' )
openpiv.tools.display_vector_field('tmpdirect.txt', scale=5000, width=0.0025)
In [ ]: