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..
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.DS_Store
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.Rapp.history
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.Rhistory
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0-BioStats.R
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0-README.md
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00-Script-Loading-R-Packages.R
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01-Script-Downloading-raw-DIA-files.R
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02-Notebook-Demultiplexing-raw-data.md
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03-Notebook-Trimming-background-proteome.md
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04-Notebook-Digesting-Background-Proteome-for-PECAN.md
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05-Notebook-Preparing-files-for-PECAN.md
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05-Script-File-path-for-PECAN.R
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06-Notebook-Building-Spectral-Library-with-PECAN.md
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07-Notebook-DIA-processing-in-Skyline.md
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08-Script-DIA-Analysis-NMDS.R
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09-Script-downloading-raw-SRM-files.R
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10-Notebook-Create-Skyline-SRM-Project.md
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11-Script-DIA-to-SRM-RT-calcs.R
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12-Script-SRM-Dilution-Curve.R
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13-Script-SRM-tech-rep-review.R
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14-Script-SRM-NMDS.R
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15-Script-SRM-Protein-Analysis.R
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16-Script-Environmental-Data-Analysis.R
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17-Script-Environmental-Pairwise-Comparisons.R
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18-Script-Growth-Survival-Analysis.R
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19-Script-Correlation-Analysis.R
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20-Script-Plots.R
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Supplemental-Script_Alternative-SRM-Tech-Rep-Review-using-NMDS.R
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