Installed ocamlfuse for mounting Google Drive, per the nice guide provided here.
%%bash
host_name=%(hostname)
echo "TODAY'S DATE"
date
echo "------------"
echo ""
echo "HOSTNAME: $host_name""
echo ""
echo "------------"
echo "Computer Specs:"
echo ""
lscpu
echo ""
echo "------------"
echo ""
echo "Memory Specs"
echo ""
free -mh
bash: line 1: syntax error near unexpected token `('
bash: line 1: `host_name=%(hostname)'
%%bash
host_name=$(hostname)
echo "TODAY'S DATE"
date
echo "------------"
echo ""
echo "HOSTNAME: $host_name""
echo ""
echo "------------"
echo "Computer Specs:"
echo ""
lscpu
echo ""
echo "------------"
echo ""
echo "Memory Specs"
echo ""
free -mh
TODAY'S DATE Mon Oct 23 09:01:50 PDT 2017 ------------
bash: line 16: unexpected EOF while looking for matching `"' bash: line 18: syntax error: unexpected end of file
%%bash
hostname
lscpu
free -mh
swoose
Architecture: x86_64
CPU op-mode(s): 32-bit, 64-bit
Byte Order: Little Endian
CPU(s): 24
On-line CPU(s) list: 0-23
Thread(s) per core: 2
Core(s) per socket: 6
Socket(s): 2
NUMA node(s): 1
Vendor ID: GenuineIntel
CPU family: 6
Model: 44
Model name: Intel(R) Xeon(R) CPU X5670 @ 2.93GHz
Stepping: 2
CPU MHz: 2925.850
BogoMIPS: 5851.96
Virtualization: VT-x
L1d cache: 32K
L1i cache: 32K
L2 cache: 256K
L3 cache: 12288K
NUMA node0 CPU(s): 0-23
Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 cx16 xtpr pdcm pcid dca sse4_1 sse4_2 popcnt aes lahf_lm epb tpr_shadow vnmi flexpriority ept vpid dtherm ida arat
total used free shared buff/cache available
Mem: 70G 6.2G 15G 256M 49G 63G
Swap: 4.7G 1.1G 3.6G
%%bash
ls -l /home/sam/uw_drive/
total 24 drwxrwxr-x 2 sam sam 4096 Dec 31 1969 eagle_Archive drwxrwxr-x 2 sam sam 4096 Dec 31 1969 eagle_Backup drwxrwxr-x 2 sam sam 4096 Dec 31 1969 eagle_homes drwxrwxr-x 2 sam sam 4096 Dec 31 1969 eagle_photo drwxrwxr-x 2 sam sam 4096 Dec 31 1969 eagle_web drwxrwxr-x 2 sam sam 4096 Mar 18 2017 owl_web
%%bash
ls /mnt/owl/
Athaliana btea cicese dlf eimd fish546 generosa halfshell index.html index.php lilmax nightingales O_lurida_genome_assemblies_BGI P_generosa_genome_assemblies_BGI phainopepla porites sam scaphapoda spartina symbiodinium testing trochophora web_images wetgenes whale
%%bash
time cp -R /home/sam/uw_drive/owl_web/scaphapoda/Sean/ \
/mnt/owl/scaphapoda/
cp: cannot create directory '/mnt/owl/scaphapoda/Sean/Oly_Platanus_Metassemble_output': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/untitled folder': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/Oly_Platanus_Assembly_Kmer-22': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/Oly_Canu_Output': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/untitled folder (38095d93)': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/untitled folder 2': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/Oly_Redundans_Output_Try_2': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/untitled folder (9762e576)': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/C_virginica': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/Untitled Folder': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/scaffolds.longreads.5.fa.tsv': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/scaffolds.longreads.4.fa': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/scaffolds.longreads.5.fa.fai': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/scaffolds.longreads.5.fa': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/scaffolds.longreads.4.fa.tsv': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/scaffolds.longreads.4.fa.fai': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/scaffolds.longreads.3.fa.tsv': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/scaffolds.longreads.3.fa.fai': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/scaffolds.longreads.3.fa': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/scaffolds.longreads.1.fa': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/scaffolds.longreads.2.fa.tsv': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/scaffolds.longreads.2.fa.fai': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/scaffolds.longreads.2.fa': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/scaffolds.longreads.1.fa.tsv': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/scaffolds.longreads.1.fa.fai': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/scaffolds.longreads.10.fa.tsv': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/scaffolds.longreads.10.fa.fai': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/scaffolds.longreads.10.fa': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/contigs.reduced.fa.hist.png': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/contigs.reduced.fa': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/contigs.reduced.fa.hetero.tsv': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/contigs.reduced.fa.fai': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/contigs.fa': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/contigs.fa.fai': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/scaffolds.longreads.6.fa': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/scaffolds.longreads.7.fa.tsv': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/scaffolds.longreads.fa': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/scaffolds.longreads.6.fa.tsv': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/scaffolds.longreads.fa.fai': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/scaffolds.longreads.9.fa.tsv': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/scaffolds.longreads.6.fa.fai': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/scaffolds.reduced.fa': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/scaffolds.longreads.8.fa.tsv': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/scaffolds.reduced.fa.hist.png': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/scaffolds.longreads.8.fa.fai': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/scaffolds.reduced.fa.hetero.tsv': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/scaffolds.longreads.7.fa.fai': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/scaffolds.reduced.fa.fai': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/scaffolds.longreads.9.fa': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/scaffolds.longreads.9.fa.fai': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/scaffolds.longreads.8.fa': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/scaffolds.longreads.7.fa': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/Oly_Redundans_Output': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/Oly_Illumina_Platanus_Assembly': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/amb-un-hardtrimmed-ACAGTG': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/HardTrimmed_Virginica_Bismark_Output': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/Non-Directional-ACAGTG': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/Andrew-Trinity-intermediates': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/Bismark_seed_length_tests_Cvirginica': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/Untitled Folder (6de07f7b)': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/Andrew_Trinity_Blast_output': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/CodOutput': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/Marcos_Stranded_Dammit_output': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/SRA_Downloads': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/C_virginica_Methylation_analysis_w_ambig_unmapped': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/Oly_Gap_Filling_Results': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/C_Virginica_Methylation_Analysis': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/VirginicaGenome': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/cVirginicaMeth.Rmd': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/Spanjer_CohoReads': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/Trinity-Test-Output': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/Geoduck_Analysis': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/Rhonda-2016-Oyster-Intermediates': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/pecanlogs': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/test-blib': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/IMG_1921.JPG': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/MethylExtract_output': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/MethylExtractOut': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/Rmd': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/geoduck-trimmed-data': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/Rplots-trimmed.pdf': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/Rplots.pdf': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/geoduck-untrimmed-data': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/Rplots2.pdf': Permission denied cp: cannot create regular file '/mnt/owl/scaphapoda/Sean/methylkit.R': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/ZR1394_BSMap_output': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/Oly_Bismark_Methylation_Output': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/Oly_Transposon': Permission denied cp: cannot create directory '/mnt/owl/scaphapoda/Sean/Oly Transposon': Permission denied cp: preserving permissions for '/mnt/owl/scaphapoda/Sean': Operation not permitted real 0m1.148s user 0m0.000s sys 0m0.016s
%%bash
time sudo cp -R /home/sam/uw_drive/owl_web/scaphapoda/Sean/ \
/mnt/owl/scaphapoda/
sudo: no tty present and no askpass program specified real 0m0.004s user 0m0.000s sys 0m0.004s