Before you turn this problem in, make sure everything runs as expected. First, restart the kernel (in the menubar, select Kernel$\rightarrow$Restart) and then run all cells (in the menubar, select Cell$\rightarrow$Run All).
Make sure you fill in any place that says YOUR CODE HERE
or "YOUR ANSWER HERE", as well as your name and collaborators below:
NAME = ""
COLLABORATORS = ""
Parameter files describing the chemical and structural properties of each residue is found in the PyRosetta package in the database/chemical/residue_type_sets
directory.
The full-atom residue parameters are stored in the /fa_standard/residue_types
directory. As an example, the parameter file for threonine is shown below.
from IPython.display import Image
Image('./Media/res-param-1.png',width='700')
from IPython.display import Image
Image('./Media/res-param-2.png',width='700')
The centroid residue parameters can be found in the /centroid/residue_types
directory. The centroid parameter file for Threonine is shown below.
from IPython.display import Image
Image('./Media/centroid-res-param.png',width='700')