Index: Tutorials

Welcome to the ssbio Binder! Here you can interactively launch notebook tutorials or even alter them to run on your own data.

Testing

These notebooks make sure the Binder environment has been installed correctly.

  • Software Installation Tester - This notebook simply tests if external programs have been installed correctly and can run in a Binder environment.
  • I-TASSER and TMHMM Install Guide - This notebook provides a guide to installing I-TASSER and TMHMM in Binder, since these require you to register with your email and cannot be installed beforehand.

The GEM-PRO Pipeline

The GEM-PRO pipeline is focused on annotating genome-scale models with protein structure information, and subsequently making it easier to work with proteins at this scale.

The Protein Class

The StructProp Class

The SeqProp Class

Other tutorials

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