In [1]:

from caveclient import CAVEclient

List available annotation tables¶

In [6]:

url = "https://global.brain-wire-test.org/"
datastack = "fish1_full"
client = CAVEclient(datastack_name=datastack, server_address=url)
client.info.get_datastacks()

Out[6]:

['h01_c3_flat', 'fish1_full', 'fish1_test']

In [3]:

# get existing tables
all_tables = client.annotation.get_tables()
all_tables

Out[3]:

['synapses_axax', 'synapses_axde', 'synapses_axax_test']

Create a table¶

To create a table a description and a table schema is required. A list of available schemas can be found here.

In [7]:

# create a new table
table_name = "soma_ids_locations"
description = """   
This table contains soma IDs and their locations. The patient's position of the soma and the tag are the soma's fixed ID numbers. Data source: gs://fish1-public/lores_cbs_231218"""
schema_name = "bound_tag"

In [10]:

client.annotation.create_table(table_name=table_name, 
                               schema_name=schema_name, 
                               description=description, 
                               voxel_resolution=[8, 8, 30])

Out[10]:

<Response [200]>

In [11]:

all_tables = client.annotation.get_tables()
all_tables

Out[11]:

['synapses_axax', 'synapses_axde', 'soma_ids_locations']

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