“We used to speak two different languages. I would talk about the biology and she would talk about coding. Now we have common ground; we can communicate to each other better. This accelerates our research,”
Reveal.js is an HTML presentation framework.
The RISE extension for Jupyter makes any Jupyter notebook into a LIVE reveal.js presentation.
Like this one! 🤩
The gallery of interesting Jupyter notebooks spans a broad range of scientific disciplines including Computer Science, Statistics, Machine Learning, Data Science, Mathematics, Physics, Chemistry, Biology, Earth Science and Geo-Spatial, Linguistics and Text Mining, Signal Processing and more.
In particular, see the reproducible academic publications section.
Finally, ___an awesome walkthrough___ of the Python data analysis pipeline from start to finish:
You can see a list of available key mappings by pressing h.
Alternatively, this can be found under Help -> Keyboard Shortcuts above.
An easy key mapping to run a cell is Shift + Enter.
the Run button in the menu above works as well.
//A cell is currently running if you see an asterisk [*] inside of the brackets in the upper left part of the cell
//For example, for this cell:
//"In [1]" while idle (number inside brackets refers to execution count)
//"In [*]" while executing
//Go ahead and try to run this cell!
%classpath config resolver scijava.public https://maven.scijava.org/content/groups/public
%classpath add mvn net.imagej imagej 2.0.0-rc-71
ij = new net.imagej.ImageJ()
ij.io().open("https://imagej.net/images/FluorescentCells.jpg")
Added new repo: scijava.public
[INFO] Populating metadata [INFO] Populating metadata