This notebook demonstrates how Clustergrammer2 can be used to visualize two simple datasets.
import numpy as np
import pandas as pd
from clustergrammer2 import net
import warnings
warnings.filterwarnings('ignore')
>> clustergrammer2 backend version 0.5.2
Try replacing this dataset with your own, by uploading data through Jupyter Lab.
net.load_file('../data/rc_two_cats.txt')
df = net.export_df()
df.shape
(38, 29)
import ipywidgets
ipywidgets.__version__
'7.5.1'
import nbconvert
nbconvert.__version__
'5.3.2.dev0'
net.load_df(df)
net.widget()
ExampleWidget(network='{"row_nodes": [{"name": "Gene: CDK4", "ini": 38, "clust": 14, "rank": 30, "rankvar": 20…