..
|
.ipynb_checkpoints
|
images
|
._2020-Oly-transcriptome-v3-annotation.ipynb
|
2020-Oly-transcriptome-v3-annotation.ipynb
|
2020-QuantSeq-Processing_Raw-to-Counts.ipynb
|
2020-QuantSeq-Testing-Pipelines.ipynb
|
Genetic Analysis from QuantSeq for O. lurida.ipynb
|
Gonad-QuantSeq-Processing_Raw-to-Counts.ipynb
|
SNP calling for genetic analysis.ipynb
|
--stdout
|
._00-Larval-size-on-release.Rmd
|
._00-Larval-size-on-release.html
|
._04-Juvenile-DEDUPLICATED-data-analysis-QuantSeq2020.Rmd
|
._04-Juvenile-data-analysis-QuantSeq2020.html
|
._06_Genetic-Structure-Analysis.html
|
._20210215_gatk_GenomicsDBImport.sh
|
._20210221_gatk_GenotypeGVCFs.sh
|
._20210310_genotype-RNASeq.sh
|
._20210310_genotype-RNASeq_test.sh
|
._20210328_jointgenotype-tissues-separately.sh
|
._Larval-size-on-release.Rmd
|
._QuantSeq-2020-DeSeq.Rmd
|
._QuantSeq-2020-multivariate-analysis.Rmd
|
00-Adult-Length.Rmd
|
00-Larval-size-on-release.Rmd
|
00-Larval-size-on-release.html
|
01-Importing-data-QuantSeq2020.Rmd
|
01-Importing-data-QuantSeq2020.html
|
02-Adult-data-analysis-QuantSeq2020.Rmd
|
03-Larval-data-analysis-QuantSeq2020.Rmd
|
03-Larval-data-analysis-QuantSeq2020.html
|
04-Juvenile-DEDUPLICATED-data-analysis-QuantSeq2020.Rmd
|
04-Juvenile-data-analysis-QuantSeq2020.Rmd
|
04-Juvenile-data-analysis-QuantSeq2020.html
|
04c-Juvenile-deduplicated-nonsib-analysis.Rmd
|
05-Juvenile-Colony-kinship.Rmd
|
05-integration-QuantSeq2020.Rmd
|
06_Genetic-Structure-Analysis.Rmd
|
06_Genetic-Structure-Analysis.html
|
20210215_gatk_GenomicsDBImport.sh
|
20210221_gatk_GenotypeGVCFs.sh
|
20210310_genotype-RNASeq.sh
|
20210310_genotype-RNASeq_redo-samples.sh
|
20210310_genotype-RNASeq_test.sh
|
20210328_jointgenotype-tissues-separately.sh
|
Colony2.DAT
|
Larval-size-on-release.Rmd
|
QuantSeq-2020-DeSeq-Salmon.Rmd
|
QuantSeq-2020-DeSeq.Rmd
|
QuantSeq-2020-Importing-STAR-Counts.Rmd
|
QuantSeq-2020-Importing-Salmon-Counts.Rmd
|
QuantSeq-2020-multivariate-analysis-Salmon.Rmd
|
QuantSeq-2020-multivariate-analysis.Rmd
|
histology.R
|
intervals_list_test.bed
|
y.csv
|
||g
|