|
smangul1's
repositories
|
|
code
|
|
number.reads
|
|
prep_salmon_for_gedit
|
|
toy.example
|
|
README.md
|
|
count_lines.sh
|
|
count_reads_fastq.gz.sh
|
|
example.reads_R1.fastq
|
|
example.reads_R2.fastq
|
|
install.sh
|
|
master.STAR.LEAFCUTTER.GENE_COUNTS.PE.sh
|
|
master.STAR.LEAFCUTTER.GENE_COUNTS.SE.sh
|
|
master.STAR.leafcutter.PE.Unsorted.sh
|
|
master.STAR.leafcutter.PE.sh
|
|
master.clonality.sh
|
|
master.generate.bai.sh
|
|
master.hisat2.48h.sh
|
|
master.hisat2.sh
|
|
master.hisat2.tuned.SE.sh
|
|
master.imrep.bam.TCGA.second_stage.sh
|
|
master.imrep.bam.TCGA.sh
|
|
master.imrep.bam.extendedOutput.sh
|
|
master.imrep.bam.hg38.sh
|
|
master.imrep.bam.sh
|
|
master.imrep.compare.TWO.repertoires.sh
|
|
master.imrep.compare.all.repertoires.sh
|
|
master.imrep.sh
|
|
master.index.bam.sh
|
|
master.leafcutter.cluster.sh
|
|
master.leafcutter.differential.intron.excision.sh
|
|
master.leafcutter.sh
|
|
master.mixcr.rna.seq.tcr.sh
|
|
master.needle.bam.sh
|
|
master.needle.sh
|
|
master.salmon.SE.sh
|
|
master.salmon.nonGZ.sh
|
|
master.salmon.sh
|
|
master.sbt.sh
|
|
master.sbt.unmapped.sh
|
|
master.sbt_microbiome.sh
|
|
master.trust.sh
|
|
run.STAR.leafcutter.PE.Unsorted.sh
|
|
run.STAR.leafcutter.PE.sh
|
|
run.analysis.pe.gzip.sh
|
|
run.analysis.se.gzip.sh
|
|
run.hisat2.tuned.SE.sh
|
|
run.hisat2.tuned.sh
|
|
run.leafcutter.bam2junc.sh
|
|
run.star.leafcutter.gene_counts.PE.sh
|
|
run.star.leafcutter.gene_counts.SE.sh
|
|
samples.txt
|
|
sbt_mtDNA.sh
|
|
submit_QSUB_array.sh
|