%%bash
date
Wed Jul 19 13:34:30 PDT 2017
%%bash
system_profiler SPSoftwareDataType
Software:
System Software Overview:
System Version: OS X 10.9.5 (13F34)
Kernel Version: Darwin 13.4.0
Boot Volume: Hummingbird
Boot Mode: Normal
Computer Name: hummingbird
User Name: srlab (srlab)
Secure Virtual Memory: Enabled
Time since boot: 43 minutes
This is all happening in scaphapoda on Eagle
Blast practice C. gigas with Swiss Prot
Finding location of BLAST database
%%bash
ls -l /Volumes/
total 8 drwxrwxr-x 21 root admin 782 Nov 9 2016 Data lrwxr-xr-x 1 root admin 1 Jul 19 12:54 Hummingbird -> / drwxr-xr-x@ 30 root wheel 1088 Jan 8 2014 Mirror drwxrwxr-x 15 srlab staff 578 Sep 16 2016 toaster drwx------@ 1 srlab staff 500 Oct 9 2015 web
%%bash
ls -l /Volumes/Data/
total 0 drwxr-xr-x 9 srlab admin 306 Jan 28 2014 CLC_local_bird drwxr-xr-x 3 srlab admin 102 Oct 17 2016 Hollie drwxr-xr-x 6 root admin 204 Jan 28 2015 Lisa drwxr-xr-x 7 Sam admin 238 Apr 7 2015 Sam drwxr-xr-x 9 srlab admin 306 Nov 9 2016 Sean drwxr-xr-x@ 48 srlab admin 1632 Nov 22 2016 Ubuntu 64-bit 16.04.1.vmwarevm drwxrwxrwx 1255 srlab admin 42670 Sep 16 2016 blast_db drwxr-xr-x 86 root admin 2924 Jul 3 2014 galaxy-dist drwxr-xr-x 10 gilesg admin 340 Aug 11 2014 giles drwxrwxrwx 3 srlab admin 102 Sep 14 2016 sr320_scratch
%%bash
ls /Volumes/Data/blast_db/
Crassostrea_gigas.GCA_000297895.1.24.fa.nhr Crassostrea_gigas.GCA_000297895.1.24.fa.nin Crassostrea_gigas.GCA_000297895.1.24.fa.nog Crassostrea_gigas.GCA_000297895.1.24.fa.nsd Crassostrea_gigas.GCA_000297895.1.24.fa.nsi Crassostrea_gigas.GCA_000297895.1.24.fa.nsq Strongylocentrotus_purpuratus.GCA_000002235.2.22.pep.all.fa Strongylocentrotus_purpuratus.GCA_000002235.2.22.pep.all.phr Strongylocentrotus_purpuratus.GCA_000002235.2.22.pep.all.pin Strongylocentrotus_purpuratus.GCA_000002235.2.22.pep.all.psq cdd_delta.aux cdd_delta.loo cdd_delta.obsr cdd_delta.phr cdd_delta.pin cdd_delta.psd cdd_delta.psi cdd_delta.psq cdd_delta.rps cdd_delta.wcounts env_nr.00.phd env_nr.00.phi env_nr.00.phr env_nr.00.pin env_nr.00.pnd env_nr.00.pni env_nr.00.pog env_nr.00.ppd env_nr.00.ppi env_nr.00.psd env_nr.00.psi env_nr.00.psq env_nr.01.phd env_nr.01.phi env_nr.01.phr env_nr.01.pin env_nr.01.pnd env_nr.01.pni env_nr.01.pog env_nr.01.ppd env_nr.01.ppi env_nr.01.psd env_nr.01.psi env_nr.01.psq env_nr.pal env_nt.00.nhd env_nt.00.nhi env_nt.00.nhr env_nt.00.nin env_nt.00.nnd env_nt.00.nni env_nt.00.nog env_nt.00.nsd env_nt.00.nsi env_nt.00.nsq env_nt.01.nhd env_nt.01.nhi env_nt.01.nhr env_nt.01.nin env_nt.01.nnd env_nt.01.nni env_nt.01.nsd env_nt.01.nsi env_nt.01.nsq env_nt.02.nhd env_nt.02.nhi env_nt.02.nhr env_nt.02.nin env_nt.02.nnd env_nt.02.nni env_nt.02.nog env_nt.02.nsd env_nt.02.nsi env_nt.02.nsq env_nt.03.nhd env_nt.03.nhi env_nt.03.nhr env_nt.03.nin env_nt.03.nnd env_nt.03.nni env_nt.03.nog env_nt.03.nsd env_nt.03.nsi env_nt.03.nsq env_nt.nal est_others.00.nhr est_others.00.nin est_others.00.nnd est_others.00.nni est_others.00.nog est_others.00.nsd est_others.00.nsi est_others.00.nsq est_others.01.nhr est_others.01.nin est_others.01.nnd est_others.01.nni est_others.01.nsd est_others.01.nsi est_others.01.nsq est_others.02.nhr est_others.02.nin est_others.02.nnd est_others.02.nni est_others.02.nog est_others.02.nsd est_others.02.nsi est_others.02.nsq est_others.03.nhr est_others.03.nin est_others.03.nnd est_others.03.nni est_others.03.nog est_others.03.nsd est_others.03.nsi est_others.03.nsq est_others.04.nhr est_others.04.nin est_others.04.nnd est_others.04.nni est_others.04.nog est_others.04.nsd est_others.04.nsi est_others.04.nsq est_others.05.nhr est_others.05.nin est_others.05.nnd est_others.05.nni est_others.05.nsd est_others.05.nsi est_others.05.nsq est_others.06.nhr est_others.06.nin est_others.06.nnd est_others.06.nni est_others.06.nog est_others.06.nsd est_others.06.nsi est_others.06.nsq est_others.07.nhr est_others.07.nin est_others.07.nnd est_others.07.nni est_others.07.nsd est_others.07.nsi est_others.07.nsq est_others.08.nhr est_others.08.nin est_others.08.nnd est_others.08.nni est_others.08.nog est_others.08.nsd est_others.08.nsi est_others.08.nsq est_others.09.nhr est_others.09.nin est_others.09.nnd est_others.09.nni est_others.09.nsd est_others.09.nsi est_others.09.nsq est_others.10.nhr est_others.10.nin est_others.10.nnd est_others.10.nni est_others.10.nsd est_others.10.nsi est_others.10.nsq est_others.nal nr.00.phd nr.00.phi nr.00.phr nr.00.pin nr.00.pnd nr.00.pni nr.00.pog nr.00.ppd nr.00.ppi nr.00.psd nr.00.psi nr.00.psq nr.01.phd nr.01.phi nr.01.phr nr.01.pin nr.01.pnd nr.01.pni nr.01.pog nr.01.ppd nr.01.ppi nr.01.psd nr.01.psi nr.01.psq nr.02.phd nr.02.phi nr.02.phr nr.02.pin nr.02.pnd nr.02.pni nr.02.pog nr.02.ppd nr.02.ppi nr.02.psd nr.02.psi nr.02.psq nr.03.phd nr.03.phi nr.03.phr nr.03.pin nr.03.pnd nr.03.pni nr.03.pog nr.03.ppd nr.03.ppi nr.03.psd nr.03.psi nr.03.psq nr.04.phd nr.04.phi nr.04.phr nr.04.pin nr.04.pnd nr.04.pni nr.04.pog nr.04.ppd nr.04.ppi nr.04.psd nr.04.psi nr.04.psq nr.05.phd nr.05.phi nr.05.phr nr.05.pin nr.05.pnd nr.05.pni nr.05.pog nr.05.ppd nr.05.ppi nr.05.psd nr.05.psi nr.05.psq nr.06.phd nr.06.phi nr.06.phr nr.06.pin nr.06.pnd nr.06.pni nr.06.pog nr.06.ppd nr.06.ppi nr.06.psd nr.06.psi nr.06.psq nr.07.phd nr.07.phi nr.07.phr nr.07.pin nr.07.pnd nr.07.pni nr.07.pog nr.07.ppd nr.07.ppi nr.07.psd nr.07.psi nr.07.psq nr.08.phd nr.08.phi nr.08.phr nr.08.pin nr.08.pnd nr.08.pni nr.08.pog nr.08.ppd nr.08.ppi nr.08.psd nr.08.psi nr.08.psq nr.09.phd nr.09.phi nr.09.phr nr.09.pin nr.09.pnd nr.09.pni nr.09.pog nr.09.ppd nr.09.ppi nr.09.psd nr.09.psi nr.09.psq nr.10.phd nr.10.phi nr.10.phr nr.10.pin nr.10.pnd nr.10.pni nr.10.pog nr.10.ppd nr.10.ppi nr.10.psd nr.10.psi nr.10.psq nr.11.phd nr.11.phi nr.11.phr nr.11.pin nr.11.pnd nr.11.pni nr.11.pog nr.11.ppd nr.11.ppi nr.11.psd nr.11.psi nr.11.psq nr.12.phd nr.12.phi nr.12.phr nr.12.pin nr.12.pnd nr.12.pni nr.12.pog nr.12.ppd nr.12.ppi nr.12.psd nr.12.psi nr.12.psq nr.13.phd nr.13.phi nr.13.phr nr.13.pin nr.13.pnd nr.13.pni nr.13.pog nr.13.ppd nr.13.ppi nr.13.psd nr.13.psi nr.13.psq nr.pal nt.00.nhd nt.00.nhi nt.00.nhr nt.00.nin nt.00.nnd nt.00.nni nt.00.nog nt.00.nsd nt.00.nsi nt.00.nsq nt.01.nhd nt.01.nhi nt.01.nhr nt.01.nin nt.01.nnd nt.01.nni nt.01.nog nt.01.nsd nt.01.nsi nt.01.nsq nt.02.nhd nt.02.nhi nt.02.nhr nt.02.nin nt.02.nnd nt.02.nni nt.02.nog nt.02.nsd nt.02.nsi nt.02.nsq nt.03.nhd nt.03.nhi nt.03.nhr nt.03.nin nt.03.nnd nt.03.nni nt.03.nog nt.03.nsd nt.03.nsi nt.03.nsq nt.04.nhd nt.04.nhi nt.04.nhr nt.04.nin nt.04.nnd nt.04.nni nt.04.nog nt.04.nsd nt.04.nsi nt.04.nsq nt.05.nhd nt.05.nhi nt.05.nhr nt.05.nin nt.05.nnd nt.05.nni nt.05.nog nt.05.nsd nt.05.nsi nt.05.nsq nt.06.nhd nt.06.nhi nt.06.nhr nt.06.nin nt.06.nnd nt.06.nni nt.06.nog nt.06.nsd nt.06.nsi nt.06.nsq nt.07.nhd nt.07.nhi nt.07.nhr nt.07.nin nt.07.nnd nt.07.nni nt.07.nog nt.07.nsd nt.07.nsi nt.07.nsq nt.08.nhd nt.08.nhi nt.08.nhr nt.08.nin nt.08.nnd nt.08.nni nt.08.nog nt.08.nsd nt.08.nsi nt.08.nsq nt.09.nhd nt.09.nhi nt.09.nhr nt.09.nin nt.09.nnd nt.09.nni nt.09.nog nt.09.nsd nt.09.nsi nt.09.nsq nt.10.nhd nt.10.nhi nt.10.nhr nt.10.nin nt.10.nnd nt.10.nni nt.10.nog nt.10.nsd nt.10.nsi nt.10.nsq nt.11.nhd nt.11.nhi nt.11.nhr nt.11.nin nt.11.nnd nt.11.nni nt.11.nog nt.11.nsd nt.11.nsi nt.11.nsq nt.12.nhd nt.12.nhi nt.12.nhr nt.12.nin nt.12.nnd nt.12.nni nt.12.nog nt.12.nsd nt.12.nsi nt.12.nsq nt.13.nhd nt.13.nhi nt.13.nhr nt.13.nin nt.13.nnd nt.13.nni nt.13.nog nt.13.nsd nt.13.nsi nt.13.nsq nt.14.nhd nt.14.nhi nt.14.nhr nt.14.nin nt.14.nnd nt.14.nni nt.14.nog nt.14.nsd nt.14.nsi nt.14.nsq nt.15.nhd nt.15.nhi nt.15.nhr nt.15.nin nt.15.nnd nt.15.nni nt.15.nog nt.15.nsd nt.15.nsi nt.15.nsq nt.nal pdbaa.00.msk pdbaa.00.pal pdbaa.01.msk pdbaa.01.pal pdbaa.02.msk pdbaa.02.pal pdbaa.03.msk pdbaa.03.pal pdbaa.04.msk pdbaa.04.pal pdbaa.05.msk pdbaa.05.pal pdbaa.06.msk pdbaa.06.pal pdbaa.07.msk pdbaa.07.pal pdbaa.08.msk pdbaa.08.pal pdbaa.09.msk pdbaa.09.pal pdbaa.10.msk pdbaa.10.pal pdbaa.11.msk pdbaa.11.pal pdbaa.12.msk pdbaa.12.pal pdbaa.13.pal pdbaa.pal refseq_genomic.00.nhr refseq_genomic.00.nin refseq_genomic.00.nnd refseq_genomic.00.nni refseq_genomic.00.nog refseq_genomic.00.nsd refseq_genomic.00.nsi refseq_genomic.00.nsq refseq_genomic.01.nhr refseq_genomic.01.nin refseq_genomic.01.nnd refseq_genomic.01.nni refseq_genomic.01.nog refseq_genomic.01.nsd refseq_genomic.01.nsi refseq_genomic.01.nsq refseq_genomic.02.nhr refseq_genomic.02.nin refseq_genomic.02.nnd refseq_genomic.02.nni refseq_genomic.02.nog refseq_genomic.02.nsd refseq_genomic.02.nsi refseq_genomic.02.nsq refseq_genomic.03.nhr refseq_genomic.03.nin refseq_genomic.03.nnd refseq_genomic.03.nni refseq_genomic.03.nog refseq_genomic.03.nsd refseq_genomic.03.nsi refseq_genomic.03.nsq refseq_genomic.04.nhr refseq_genomic.04.nin refseq_genomic.04.nnd refseq_genomic.04.nni refseq_genomic.04.nog refseq_genomic.04.nsd refseq_genomic.04.nsi refseq_genomic.04.nsq refseq_genomic.05.nhr refseq_genomic.05.nin refseq_genomic.05.nnd refseq_genomic.05.nni refseq_genomic.05.nog refseq_genomic.05.nsd refseq_genomic.05.nsi refseq_genomic.05.nsq refseq_genomic.06.nhr refseq_genomic.06.nin refseq_genomic.06.nnd refseq_genomic.06.nni refseq_genomic.06.nog refseq_genomic.06.nsd refseq_genomic.06.nsi refseq_genomic.06.nsq refseq_genomic.07.nhr refseq_genomic.07.nin refseq_genomic.07.nnd refseq_genomic.07.nni refseq_genomic.07.nog refseq_genomic.07.nsd refseq_genomic.07.nsi refseq_genomic.07.nsq refseq_genomic.08.nhr refseq_genomic.08.nin refseq_genomic.08.nnd refseq_genomic.08.nni refseq_genomic.08.nog refseq_genomic.08.nsd refseq_genomic.08.nsi refseq_genomic.08.nsq refseq_genomic.09.nhr refseq_genomic.09.nin refseq_genomic.09.nnd refseq_genomic.09.nni refseq_genomic.09.nog refseq_genomic.09.nsd refseq_genomic.09.nsi refseq_genomic.09.nsq refseq_genomic.10.nhr refseq_genomic.10.nin refseq_genomic.10.nnd refseq_genomic.10.nni refseq_genomic.10.nog refseq_genomic.10.nsd refseq_genomic.10.nsi refseq_genomic.10.nsq refseq_genomic.11.nhr refseq_genomic.11.nin refseq_genomic.11.nnd refseq_genomic.11.nni refseq_genomic.11.nog refseq_genomic.11.nsd refseq_genomic.11.nsi refseq_genomic.11.nsq refseq_genomic.12.nhr refseq_genomic.12.nin refseq_genomic.12.nnd refseq_genomic.12.nni refseq_genomic.12.nog refseq_genomic.12.nsd refseq_genomic.12.nsi refseq_genomic.12.nsq refseq_genomic.13.nhr refseq_genomic.13.nin refseq_genomic.13.nnd refseq_genomic.13.nni refseq_genomic.13.nog refseq_genomic.13.nsd refseq_genomic.13.nsi refseq_genomic.13.nsq refseq_genomic.14.nhr refseq_genomic.14.nin refseq_genomic.14.nnd refseq_genomic.14.nni refseq_genomic.14.nog refseq_genomic.14.nsd refseq_genomic.14.nsi refseq_genomic.14.nsq refseq_genomic.15.nhr refseq_genomic.15.nin refseq_genomic.15.nnd refseq_genomic.15.nni refseq_genomic.15.nog refseq_genomic.15.nsd refseq_genomic.15.nsi refseq_genomic.15.nsq refseq_genomic.16.nhr refseq_genomic.16.nin refseq_genomic.16.nnd refseq_genomic.16.nni refseq_genomic.16.nog refseq_genomic.16.nsd refseq_genomic.16.nsi refseq_genomic.16.nsq refseq_genomic.17.nhr refseq_genomic.17.nin refseq_genomic.17.nnd refseq_genomic.17.nni refseq_genomic.17.nog refseq_genomic.17.nsd refseq_genomic.17.nsi refseq_genomic.17.nsq refseq_genomic.18.nhr refseq_genomic.18.nin refseq_genomic.18.nnd refseq_genomic.18.nni refseq_genomic.18.nog refseq_genomic.18.nsd refseq_genomic.18.nsi refseq_genomic.18.nsq refseq_genomic.19.nhr refseq_genomic.19.nin refseq_genomic.19.nnd refseq_genomic.19.nni refseq_genomic.19.nog refseq_genomic.19.nsd refseq_genomic.19.nsi refseq_genomic.19.nsq refseq_genomic.20.nhr refseq_genomic.20.nin refseq_genomic.20.nnd refseq_genomic.20.nni refseq_genomic.20.nog refseq_genomic.20.nsd refseq_genomic.20.nsi refseq_genomic.20.nsq refseq_genomic.21.nhr refseq_genomic.21.nin refseq_genomic.21.nnd refseq_genomic.21.nni refseq_genomic.21.nog refseq_genomic.21.nsd refseq_genomic.21.nsi refseq_genomic.21.nsq refseq_genomic.22.nhr refseq_genomic.22.nin refseq_genomic.22.nnd refseq_genomic.22.nni refseq_genomic.22.nog refseq_genomic.22.nsd refseq_genomic.22.nsi refseq_genomic.22.nsq refseq_genomic.23.nhr refseq_genomic.23.nin refseq_genomic.23.nnd refseq_genomic.23.nni refseq_genomic.23.nog refseq_genomic.23.nsd refseq_genomic.23.nsi refseq_genomic.23.nsq refseq_genomic.24.nhr refseq_genomic.24.nin refseq_genomic.24.nnd refseq_genomic.24.nni refseq_genomic.24.nog refseq_genomic.24.nsd refseq_genomic.24.nsi refseq_genomic.24.nsq refseq_genomic.25.nhr refseq_genomic.25.nin refseq_genomic.25.nnd refseq_genomic.25.nni refseq_genomic.25.nog refseq_genomic.25.nsd refseq_genomic.25.nsi refseq_genomic.25.nsq refseq_genomic.26.nhr refseq_genomic.26.nin refseq_genomic.26.nnd refseq_genomic.26.nni refseq_genomic.26.nog refseq_genomic.26.nsd refseq_genomic.26.nsi refseq_genomic.26.nsq refseq_genomic.27.nhr refseq_genomic.27.nin refseq_genomic.27.nnd refseq_genomic.27.nni refseq_genomic.27.nog refseq_genomic.27.nsd refseq_genomic.27.nsi refseq_genomic.27.nsq refseq_genomic.28.nhr refseq_genomic.28.nin refseq_genomic.28.nnd refseq_genomic.28.nni refseq_genomic.28.nog refseq_genomic.28.nsd refseq_genomic.28.nsi refseq_genomic.28.nsq refseq_genomic.29.nhr refseq_genomic.29.nin refseq_genomic.29.nnd refseq_genomic.29.nni refseq_genomic.29.nog refseq_genomic.29.nsd refseq_genomic.29.nsi refseq_genomic.29.nsq refseq_genomic.30.nhr refseq_genomic.30.nin refseq_genomic.30.nnd refseq_genomic.30.nni refseq_genomic.30.nog refseq_genomic.30.nsd refseq_genomic.30.nsi refseq_genomic.30.nsq refseq_genomic.31.nhr refseq_genomic.31.nin refseq_genomic.31.nnd refseq_genomic.31.nni refseq_genomic.31.nog refseq_genomic.31.nsd refseq_genomic.31.nsi refseq_genomic.31.nsq refseq_genomic.32.nhr refseq_genomic.32.nin refseq_genomic.32.nnd refseq_genomic.32.nni refseq_genomic.32.nog refseq_genomic.32.nsd refseq_genomic.32.nsi refseq_genomic.32.nsq refseq_genomic.33.nhr refseq_genomic.33.nin refseq_genomic.33.nnd refseq_genomic.33.nni refseq_genomic.33.nog refseq_genomic.33.nsd refseq_genomic.33.nsi refseq_genomic.33.nsq refseq_genomic.34.nhr refseq_genomic.34.nin refseq_genomic.34.nnd refseq_genomic.34.nni refseq_genomic.34.nog refseq_genomic.34.nsd refseq_genomic.34.nsi refseq_genomic.34.nsq refseq_genomic.35.nhr refseq_genomic.35.nin refseq_genomic.35.nnd refseq_genomic.35.nni refseq_genomic.35.nog refseq_genomic.35.nsd refseq_genomic.35.nsi refseq_genomic.35.nsq refseq_genomic.36.nhr refseq_genomic.36.nin refseq_genomic.36.nnd refseq_genomic.36.nni refseq_genomic.36.nog refseq_genomic.36.nsd refseq_genomic.36.nsi refseq_genomic.36.nsq refseq_genomic.37.nhr refseq_genomic.37.nin refseq_genomic.37.nnd refseq_genomic.37.nni refseq_genomic.37.nog refseq_genomic.37.nsd refseq_genomic.37.nsi refseq_genomic.37.nsq refseq_genomic.38.nhr refseq_genomic.38.nin refseq_genomic.38.nnd refseq_genomic.38.nni refseq_genomic.38.nog refseq_genomic.38.nsd refseq_genomic.38.nsi refseq_genomic.38.nsq refseq_genomic.39.nhr refseq_genomic.39.nin refseq_genomic.39.nnd refseq_genomic.39.nni refseq_genomic.39.nog refseq_genomic.39.nsd refseq_genomic.39.nsi refseq_genomic.39.nsq refseq_genomic.40.nhr refseq_genomic.40.nin refseq_genomic.40.nnd refseq_genomic.40.nni refseq_genomic.40.nog refseq_genomic.40.nsd refseq_genomic.40.nsi refseq_genomic.40.nsq refseq_genomic.41.nhr refseq_genomic.41.nin refseq_genomic.41.nnd refseq_genomic.41.nni refseq_genomic.41.nog refseq_genomic.41.nsd refseq_genomic.41.nsi refseq_genomic.41.nsq refseq_genomic.42.nhr refseq_genomic.42.nin refseq_genomic.42.nnd refseq_genomic.42.nni refseq_genomic.42.nog refseq_genomic.42.nsd refseq_genomic.42.nsi refseq_genomic.42.nsq refseq_genomic.43.nhr refseq_genomic.43.nin refseq_genomic.43.nnd refseq_genomic.43.nni refseq_genomic.43.nog refseq_genomic.43.nsd refseq_genomic.43.nsi refseq_genomic.43.nsq refseq_genomic.44.nhr refseq_genomic.44.nin refseq_genomic.44.nnd refseq_genomic.44.nni refseq_genomic.44.nog refseq_genomic.44.nsd refseq_genomic.44.nsi refseq_genomic.44.nsq refseq_genomic.45.nhr refseq_genomic.45.nin refseq_genomic.45.nnd refseq_genomic.45.nni refseq_genomic.45.nog refseq_genomic.45.nsd refseq_genomic.45.nsi refseq_genomic.45.nsq refseq_genomic.46.nhr refseq_genomic.46.nin refseq_genomic.46.nnd 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swissprot.12.msk swissprot.12.pal swissprot.13.msk swissprot.13.pal swissprot.pal taxdb.btd taxdb.bti taxdb.tar.gz uniprot-mouse-reference.fasta uniprot-mouse-reference.phr uniprot-mouse-reference.pin uniprot-mouse-reference.psq uniprot_sprot.fasta uniprot_sprot.phr uniprot_sprot.pin uniprot_sprot.psq uniprot_sprot_091616.fasta uniprot_sprot_091616.phr uniprot_sprot_091616.pin uniprot_sprot_091616.psq vector.nhr vector.nin vector.nnd vector.nni vector.nsd vector.nsi vector.nsq
%%bash
pwd
/Users/srlab/gitrepos/LabDocs/jupyter_nbs/grace
%%bash
blastx \
-query /Volumes/web/Grace/Transcriptomes/c_gigas/query.fa \
-db /Volumes/Data/blast_db/uniprot_sprot \
-max_target_seqs 1 \
-max_hsps 1 \
-outfmt 6 \
-num_threads 8 \
-out /Volumes/web/Grace/Transcriptomes/c_gigas/blast_gigas_sprot.tab