%%bash
date
Tue Aug 16 09:47:04 PDT 2016
%%bash
hostname
robertsmac.fish.washington.edu
%%bash
system_profiler SPSoftwareDataType
Software:
System Software Overview:
System Version: Mac OS X 10.7.5 (11G63)
Kernel Version: Darwin 11.4.2
Boot Volume: SSD2
Boot Mode: Normal
Computer Name: greenbird (2)
User Name: Sam (Sam)
Secure Virtual Memory: Enabled
64-bit Kernel and Extensions: No
Time since boot: 6 days 17:56
%%bash
#Uses grep to exclude lines that display serial number and hardware UUID
system_profiler SPHardwareDataType | grep -v [SH][ea]
Model Name: Mac Pro
Model Identifier: MacPro1,1
Processor Name: Dual-Core Intel Xeon
Processor Speed: 3 GHz
Number of Processors: 2
Total Number of Cores: 4
L2 Cache (per Processor): 4 MB
Memory: 14 GB
Bus Speed: 1.33 GHz
Boot ROM Version: MP11.005C.B08
SMC Version (system): 1.7f10
cd
/Users/Sam
%%bash
mkdir 20160816_oly_gbs_fastStructure_analysis
cd 20160816_oly_gbs_fastStructure_analysis/
/Users/Sam/20160816_oly_gbs_fastStructure_analysis
%%bash
git clone https://github.com/rajanil/fastStructure
Cloning into fastStructure...
ls
fastStructure/
%%bash
pip list | grep '[Cc]ython\|numpy\|scipy'
Cython (0.23.4) numpy (1.10.1) scipy (0.16.0)
%%bash
brew install gsl
Warning: Your Xcode (4.2.1) is outdated Please install Xcode 4.5.1. Warning: It appears you have MacPorts or Fink installed. Software installed with other package managers causes known problems for Homebrew. If a formula fails to build, uninstall MacPorts/Fink and try again. ==> Downloading http://ftpmirror.gnu.org/gsl/gsl-1.15.tar.gz ==> ./configure --prefix=/usr/local/Cellar/gsl/1.15 ==> make ==> make install Warning: m4 macros were installed to "share/aclocal". Homebrew does not append "/usr/local/share/aclocal" to "/usr/share/aclocal/dirlist". If an autoconf script you use requires these m4 macros, you'll need to add this path manually. Warning: Could not link gsl. Unlinking... Error: The `brew link` step did not complete successfully The formula built, but is not symlinked into /usr/local You can try again using `brew link gsl' ==> Summary /usr/local/Cellar/gsl/1.15: 237 files, 7.0M, built in 97 seconds
%%bash
cd
wget http://open-source-box.org/gsl/gsl-latest.tar.gz
tar -xzf gsl-latest.tar.gz
--2016-08-16 11:09:16-- http://open-source-box.org/gsl/gsl-latest.tar.gz
Resolving open-source-box.org... 173.234.185.173
Connecting to open-source-box.org|173.234.185.173|:80... connected.
HTTP request sent, awaiting response... 200 OK
Length: 3827265 (3.6M) [application/x-gzip]
Saving to: `gsl-latest.tar.gz'
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3700K .......... .......... .......... ....... 100% 1.33M=2.2s
2016-08-16 11:09:18 (1.67 MB/s) - `gsl-latest.tar.gz' saved [3827265/3827265]
ls /Users/Sam/gsl-2.1/
AUTHORS autogen.sh* config.sub* fit/ gsl_mode.h linalg/ multiset/ siman/ test-driver* BUGS blas/ configure* gsl/ gsl_nan.h ltmain.sh ntuple/ sort/ test_gsl_histogram.sh* COPYING block/ configure.ac gsl-config.in* gsl_pow_int.h matrix/ ode-initval/ spblas/ utils/ ChangeLog bspline/ const/ gsl-histogram.c gsl_precision.h mdate-sh ode-initval2/ specfunc/ vector/ INSTALL build.h depcomp* gsl-randist.c gsl_types.h min/ permutation/ splinalg/ version.c Makefile.am cblas/ deriv/ gsl.m4 gsl_version.h missing* pkgconfig.test* spmatrix/ wavelet/ Makefile.in cdf/ dht/ gsl.pc.in gsl_version.h.in mkinstalldirs* poly/ statistics/ NEWS cheb/ diff/ gsl.spec.in histogram/ monte/ qrng/ sum/ README combination/ doc/ gsl_inline.h ieee-utils/ multifit/ randist/ sys/ THANKS complex/ eigen/ gsl_machine.h install-sh* multilarge/ rng/ templates_off.h TODO config.guess* err/ gsl_math.h integration/ multimin/ roots/ templates_on.h aclocal.m4 config.h.in fft/ gsl_minmax.h interpolation/ multiroots/ rstat/ test/
%%bash
cat /Users/Sam/gsl-2.1/INSTALL
Installation Instructions
*************************
Copyright (C) 1994-1996, 1999-2002, 2004-2013 Free Software Foundation,
Inc.
Copying and distribution of this file, with or without modification,
are permitted in any medium without royalty provided the copyright
notice and this notice are preserved. This file is offered as-is,
without warranty of any kind.
Basic Installation
==================
Briefly, the shell commands `./configure; make; make install' should
configure, build, and install this package. The following
more-detailed instructions are generic; see the `README' file for
instructions specific to this package. Some packages provide this
`INSTALL' file but do not implement all of the features documented
below. The lack of an optional feature in a given package is not
necessarily a bug. More recommendations for GNU packages can be found
in *note Makefile Conventions: (standards)Makefile Conventions.
The `configure' shell script attempts to guess correct values for
various system-dependent variables used during compilation. It uses
those values to create a `Makefile' in each directory of the package.
It may also create one or more `.h' files containing system-dependent
definitions. Finally, it creates a shell script `config.status' that
you can run in the future to recreate the current configuration, and a
file `config.log' containing compiler output (useful mainly for
debugging `configure').
It can also use an optional file (typically called `config.cache'
and enabled with `--cache-file=config.cache' or simply `-C') that saves
the results of its tests to speed up reconfiguring. Caching is
disabled by default to prevent problems with accidental use of stale
cache files.
If you need to do unusual things to compile the package, please try
to figure out how `configure' could check whether to do them, and mail
diffs or instructions to the address given in the `README' so they can
be considered for the next release. If you are using the cache, and at
some point `config.cache' contains results you don't want to keep, you
may remove or edit it.
The file `configure.ac' (or `configure.in') is used to create
`configure' by a program called `autoconf'. You need `configure.ac' if
you want to change it or regenerate `configure' using a newer version
of `autoconf'.
The simplest way to compile this package is:
1. `cd' to the directory containing the package's source code and type
`./configure' to configure the package for your system.
Running `configure' might take a while. While running, it prints
some messages telling which features it is checking for.
2. Type `make' to compile the package.
3. Optionally, type `make check' to run any self-tests that come with
the package, generally using the just-built uninstalled binaries.
4. Type `make install' to install the programs and any data files and
documentation. When installing into a prefix owned by root, it is
recommended that the package be configured and built as a regular
user, and only the `make install' phase executed with root
privileges.
5. Optionally, type `make installcheck' to repeat any self-tests, but
this time using the binaries in their final installed location.
This target does not install anything. Running this target as a
regular user, particularly if the prior `make install' required
root privileges, verifies that the installation completed
correctly.
6. You can remove the program binaries and object files from the
source code directory by typing `make clean'. To also remove the
files that `configure' created (so you can compile the package for
a different kind of computer), type `make distclean'. There is
also a `make maintainer-clean' target, but that is intended mainly
for the package's developers. If you use it, you may have to get
all sorts of other programs in order to regenerate files that came
with the distribution.
7. Often, you can also type `make uninstall' to remove the installed
files again. In practice, not all packages have tested that
uninstallation works correctly, even though it is required by the
GNU Coding Standards.
8. Some packages, particularly those that use Automake, provide `make
distcheck', which can by used by developers to test that all other
targets like `make install' and `make uninstall' work correctly.
This target is generally not run by end users.
Compilers and Options
=====================
Some systems require unusual options for compilation or linking that
the `configure' script does not know about. Run `./configure --help'
for details on some of the pertinent environment variables.
You can give `configure' initial values for configuration parameters
by setting variables in the command line or in the environment. Here
is an example:
./configure CC=c99 CFLAGS=-g LIBS=-lposix
*Note Defining Variables::, for more details.
Compiling For Multiple Architectures
====================================
You can compile the package for more than one kind of computer at the
same time, by placing the object files for each architecture in their
own directory. To do this, you can use GNU `make'. `cd' to the
directory where you want the object files and executables to go and run
the `configure' script. `configure' automatically checks for the
source code in the directory that `configure' is in and in `..'. This
is known as a "VPATH" build.
With a non-GNU `make', it is safer to compile the package for one
architecture at a time in the source code directory. After you have
installed the package for one architecture, use `make distclean' before
reconfiguring for another architecture.
On MacOS X 10.5 and later systems, you can create libraries and
executables that work on multiple system types--known as "fat" or
"universal" binaries--by specifying multiple `-arch' options to the
compiler but only a single `-arch' option to the preprocessor. Like
this:
./configure CC="gcc -arch i386 -arch x86_64 -arch ppc -arch ppc64" \
CXX="g++ -arch i386 -arch x86_64 -arch ppc -arch ppc64" \
CPP="gcc -E" CXXCPP="g++ -E"
This is not guaranteed to produce working output in all cases, you
may have to build one architecture at a time and combine the results
using the `lipo' tool if you have problems.
Installation Names
==================
By default, `make install' installs the package's commands under
`/usr/local/bin', include files under `/usr/local/include', etc. You
can specify an installation prefix other than `/usr/local' by giving
`configure' the option `--prefix=PREFIX', where PREFIX must be an
absolute file name.
You can specify separate installation prefixes for
architecture-specific files and architecture-independent files. If you
pass the option `--exec-prefix=PREFIX' to `configure', the package uses
PREFIX as the prefix for installing programs and libraries.
Documentation and other data files still use the regular prefix.
In addition, if you use an unusual directory layout you can give
options like `--bindir=DIR' to specify different values for particular
kinds of files. Run `configure --help' for a list of the directories
you can set and what kinds of files go in them. In general, the
default for these options is expressed in terms of `${prefix}', so that
specifying just `--prefix' will affect all of the other directory
specifications that were not explicitly provided.
The most portable way to affect installation locations is to pass the
correct locations to `configure'; however, many packages provide one or
both of the following shortcuts of passing variable assignments to the
`make install' command line to change installation locations without
having to reconfigure or recompile.
The first method involves providing an override variable for each
affected directory. For example, `make install
prefix=/alternate/directory' will choose an alternate location for all
directory configuration variables that were expressed in terms of
`${prefix}'. Any directories that were specified during `configure',
but not in terms of `${prefix}', must each be overridden at install
time for the entire installation to be relocated. The approach of
makefile variable overrides for each directory variable is required by
the GNU Coding Standards, and ideally causes no recompilation.
However, some platforms have known limitations with the semantics of
shared libraries that end up requiring recompilation when using this
method, particularly noticeable in packages that use GNU Libtool.
The second method involves providing the `DESTDIR' variable. For
example, `make install DESTDIR=/alternate/directory' will prepend
`/alternate/directory' before all installation names. The approach of
`DESTDIR' overrides is not required by the GNU Coding Standards, and
does not work on platforms that have drive letters. On the other hand,
it does better at avoiding recompilation issues, and works well even
when some directory options were not specified in terms of `${prefix}'
at `configure' time.
Optional Features
=================
If the package supports it, you can cause programs to be installed
with an extra prefix or suffix on their names by giving `configure' the
option `--program-prefix=PREFIX' or `--program-suffix=SUFFIX'.
Some packages pay attention to `--enable-FEATURE' options to
`configure', where FEATURE indicates an optional part of the package.
They may also pay attention to `--with-PACKAGE' options, where PACKAGE
is something like `gnu-as' or `x' (for the X Window System). The
`README' should mention any `--enable-' and `--with-' options that the
package recognizes.
For packages that use the X Window System, `configure' can usually
find the X include and library files automatically, but if it doesn't,
you can use the `configure' options `--x-includes=DIR' and
`--x-libraries=DIR' to specify their locations.
Some packages offer the ability to configure how verbose the
execution of `make' will be. For these packages, running `./configure
--enable-silent-rules' sets the default to minimal output, which can be
overridden with `make V=1'; while running `./configure
--disable-silent-rules' sets the default to verbose, which can be
overridden with `make V=0'.
Particular systems
==================
On HP-UX, the default C compiler is not ANSI C compatible. If GNU
CC is not installed, it is recommended to use the following options in
order to use an ANSI C compiler:
./configure CC="cc -Ae -D_XOPEN_SOURCE=500"
and if that doesn't work, install pre-built binaries of GCC for HP-UX.
HP-UX `make' updates targets which have the same time stamps as
their prerequisites, which makes it generally unusable when shipped
generated files such as `configure' are involved. Use GNU `make'
instead.
On OSF/1 a.k.a. Tru64, some versions of the default C compiler cannot
parse its `<wchar.h>' header file. The option `-nodtk' can be used as
a workaround. If GNU CC is not installed, it is therefore recommended
to try
./configure CC="cc"
and if that doesn't work, try
./configure CC="cc -nodtk"
On Solaris, don't put `/usr/ucb' early in your `PATH'. This
directory contains several dysfunctional programs; working variants of
these programs are available in `/usr/bin'. So, if you need `/usr/ucb'
in your `PATH', put it _after_ `/usr/bin'.
On Haiku, software installed for all users goes in `/boot/common',
not `/usr/local'. It is recommended to use the following options:
./configure --prefix=/boot/common
Specifying the System Type
==========================
There may be some features `configure' cannot figure out
automatically, but needs to determine by the type of machine the package
will run on. Usually, assuming the package is built to be run on the
_same_ architectures, `configure' can figure that out, but if it prints
a message saying it cannot guess the machine type, give it the
`--build=TYPE' option. TYPE can either be a short name for the system
type, such as `sun4', or a canonical name which has the form:
CPU-COMPANY-SYSTEM
where SYSTEM can have one of these forms:
OS
KERNEL-OS
See the file `config.sub' for the possible values of each field. If
`config.sub' isn't included in this package, then this package doesn't
need to know the machine type.
If you are _building_ compiler tools for cross-compiling, you should
use the option `--target=TYPE' to select the type of system they will
produce code for.
If you want to _use_ a cross compiler, that generates code for a
platform different from the build platform, you should specify the
"host" platform (i.e., that on which the generated programs will
eventually be run) with `--host=TYPE'.
Sharing Defaults
================
If you want to set default values for `configure' scripts to share,
you can create a site shell script called `config.site' that gives
default values for variables like `CC', `cache_file', and `prefix'.
`configure' looks for `PREFIX/share/config.site' if it exists, then
`PREFIX/etc/config.site' if it exists. Or, you can set the
`CONFIG_SITE' environment variable to the location of the site script.
A warning: not all `configure' scripts look for a site script.
Defining Variables
==================
Variables not defined in a site shell script can be set in the
environment passed to `configure'. However, some packages may run
configure again during the build, and the customized values of these
variables may be lost. In order to avoid this problem, you should set
them in the `configure' command line, using `VAR=value'. For example:
./configure CC=/usr/local2/bin/gcc
causes the specified `gcc' to be used as the C compiler (unless it is
overridden in the site shell script).
Unfortunately, this technique does not work for `CONFIG_SHELL' due to
an Autoconf limitation. Until the limitation is lifted, you can use
this workaround:
CONFIG_SHELL=/bin/bash ./configure CONFIG_SHELL=/bin/bash
`configure' Invocation
======================
`configure' recognizes the following options to control how it
operates.
`--help'
`-h'
Print a summary of all of the options to `configure', and exit.
`--help=short'
`--help=recursive'
Print a summary of the options unique to this package's
`configure', and exit. The `short' variant lists options used
only in the top level, while the `recursive' variant lists options
also present in any nested packages.
`--version'
`-V'
Print the version of Autoconf used to generate the `configure'
script, and exit.
`--cache-file=FILE'
Enable the cache: use and save the results of the tests in FILE,
traditionally `config.cache'. FILE defaults to `/dev/null' to
disable caching.
`--config-cache'
`-C'
Alias for `--cache-file=config.cache'.
`--quiet'
`--silent'
`-q'
Do not print messages saying which checks are being made. To
suppress all normal output, redirect it to `/dev/null' (any error
messages will still be shown).
`--srcdir=DIR'
Look for the package's source code in directory DIR. Usually
`configure' can determine that directory automatically.
`--prefix=DIR'
Use DIR as the installation prefix. *note Installation Names::
for more details, including other options available for fine-tuning
the installation locations.
`--no-create'
`-n'
Run the configure checks, but stop before creating any output
files.
`configure' also accepts some other, not widely useful, options. Run
`configure --help' for more details.
cd /Users/Sam/gsl-2.1/
/Users/Sam/gsl-2.1
%%bash
./configure
checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... ./install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for a sed that does not truncate output... /usr/bin/sed checking whether make sets $(MAKE)... (cached) yes checking build system type... x86_64-apple-darwin11.4.2 checking host system type... x86_64-apple-darwin11.4.2 checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... gcc3 checking how to run the C preprocessor... gcc -E checking whether ln -s works... yes checking how to print strings... printf checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld checking if the linker (/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld) is GNU ld... no checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm checking the name lister (/usr/bin/nm) interface... BSD nm checking the maximum length of command line arguments... 196608 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-apple-darwin11.4.2 file names to x86_64-apple-darwin11.4.2 format... func_convert_file_noop checking how to convert x86_64-apple-darwin11.4.2 file names to toolchain format... func_convert_file_noop checking for /usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld option to reload object files... -r checking for objdump... no checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... no checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm output from gcc object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking for dsymutil... dsymutil checking for nmedit... nmedit checking for lipo... lipo checking for otool... otool checking for otool64... no checking for -single_module linker flag... yes checking for -exported_symbols_list linker flag... yes checking for -force_load linker flag... yes checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fno-common -DPIC checking if gcc PIC flag -fno-common -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin11.4.2 dyld checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for size_t... yes checking for working volatile... yes checking for inline... inline checking whether char is unsigned... no checking for GNU-style extern inline... yes checking ieeefp.h usability... no checking ieeefp.h presence... no checking for ieeefp.h... no checking for vprintf... yes checking for _doprnt... no checking for memcpy... yes checking for memmove... yes checking for strdup... yes checking for strtol... yes checking for strtoul... yes checking for EXIT_SUCCESS and EXIT_FAILURE... yes checking for cos in -lm... yes checking whether feenableexcept is declared... no checking whether fesettrapenable is declared... no checking whether hypot is declared... yes checking whether expm1 is declared... yes checking whether acosh is declared... yes checking whether asinh is declared... yes checking whether atanh is declared... yes checking whether ldexp is declared... yes checking whether frexp is declared... yes checking whether fprnd_t is declared... no checking whether isinf is declared... yes checking whether isfinite is declared... yes checking whether finite is declared... yes checking whether isnan is declared... yes checking whether log1p is declared... yes checking for long double stdio... yes checking for extended floating point registers... yes checking for IEEE arithmetic interface type... unknown checking for IEEE compiler flags... none checking for IEEE comparisons... yes checking for IEEE denormalized values... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating gsl_version.h config.status: creating gsl.spec config.status: creating blas/Makefile config.status: creating block/Makefile config.status: creating bspline/Makefile config.status: creating cblas/Makefile config.status: creating cdf/Makefile config.status: creating cheb/Makefile config.status: creating combination/Makefile config.status: creating complex/Makefile config.status: creating const/Makefile config.status: creating deriv/Makefile config.status: creating dht/Makefile config.status: creating diff/Makefile config.status: creating doc/Makefile config.status: creating doc/examples/Makefile config.status: creating eigen/Makefile config.status: creating err/Makefile config.status: creating fit/Makefile config.status: creating fft/Makefile config.status: creating gsl/Makefile config.status: creating histogram/Makefile config.status: creating ieee-utils/Makefile config.status: creating integration/Makefile config.status: creating interpolation/Makefile config.status: creating linalg/Makefile config.status: creating matrix/Makefile config.status: creating min/Makefile config.status: creating monte/Makefile config.status: creating multifit/Makefile config.status: creating multilarge/Makefile config.status: creating multimin/Makefile config.status: creating multiroots/Makefile config.status: creating multiset/Makefile config.status: creating ntuple/Makefile config.status: creating ode-initval/Makefile config.status: creating ode-initval2/Makefile config.status: creating permutation/Makefile config.status: creating poly/Makefile config.status: creating qrng/Makefile config.status: creating randist/Makefile config.status: creating rng/Makefile config.status: creating roots/Makefile config.status: creating rstat/Makefile config.status: creating siman/Makefile config.status: creating sort/Makefile config.status: creating spblas/Makefile config.status: creating splinalg/Makefile config.status: creating spmatrix/Makefile config.status: creating specfunc/Makefile config.status: creating statistics/Makefile config.status: creating sum/Makefile config.status: creating sys/Makefile config.status: creating test/Makefile config.status: creating utils/Makefile config.status: creating vector/Makefile config.status: creating wavelet/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands
%%bash
make
make all-recursive Making all in gsl rm -f gsl*.h HEADERLIST="../gsl*.h ../*/gsl*.h"; \ for h in $HEADERLIST; do \ BASENAME=`basename $h`; \ test -r $BASENAME || ln -s $h $BASENAME; \ done Making all in utils /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT placeholder.lo -MD -MP -MF .deps/placeholder.Tpo -c -o placeholder.lo placeholder.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT placeholder.lo -MD -MP -MF .deps/placeholder.Tpo -c placeholder.c -fno-common -DPIC -o .libs/placeholder.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT placeholder.lo -MD -MP -MF .deps/placeholder.Tpo -c placeholder.c -o placeholder.o >/dev/null 2>&1 mv -f .deps/placeholder.Tpo .deps/placeholder.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libutils.la placeholder.lo -lm libtool: link: ar cru .libs/libutils.a .libs/placeholder.o libtool: link: ranlib .libs/libutils.a libtool: link: ( cd ".libs" && rm -f "libutils.la" && ln -s "../libutils.la" "libutils.la" ) Making all in sys /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT minmax.lo -MD -MP -MF .deps/minmax.Tpo -c -o minmax.lo minmax.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT minmax.lo -MD -MP -MF .deps/minmax.Tpo -c minmax.c -fno-common -DPIC -o .libs/minmax.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT minmax.lo -MD -MP -MF .deps/minmax.Tpo -c minmax.c -o minmax.o >/dev/null 2>&1 mv -f .deps/minmax.Tpo .deps/minmax.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT prec.lo -MD -MP -MF .deps/prec.Tpo -c -o prec.lo prec.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT prec.lo -MD -MP -MF .deps/prec.Tpo -c prec.c -fno-common -DPIC -o .libs/prec.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT prec.lo -MD -MP -MF .deps/prec.Tpo -c prec.c -o prec.o >/dev/null 2>&1 mv -f .deps/prec.Tpo .deps/prec.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT hypot.lo -MD -MP -MF .deps/hypot.Tpo -c -o hypot.lo hypot.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT hypot.lo -MD -MP -MF .deps/hypot.Tpo -c hypot.c -fno-common -DPIC -o .libs/hypot.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT hypot.lo -MD -MP -MF .deps/hypot.Tpo -c hypot.c -o hypot.o >/dev/null 2>&1 mv -f .deps/hypot.Tpo .deps/hypot.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT log1p.lo -MD -MP -MF .deps/log1p.Tpo -c -o log1p.lo log1p.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT log1p.lo -MD -MP -MF .deps/log1p.Tpo -c log1p.c -fno-common -DPIC -o .libs/log1p.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT log1p.lo -MD -MP -MF .deps/log1p.Tpo -c log1p.c -o log1p.o >/dev/null 2>&1 mv -f .deps/log1p.Tpo .deps/log1p.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT expm1.lo -MD -MP -MF .deps/expm1.Tpo -c -o expm1.lo expm1.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT expm1.lo -MD -MP -MF .deps/expm1.Tpo -c expm1.c -fno-common -DPIC -o .libs/expm1.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT expm1.lo -MD -MP -MF .deps/expm1.Tpo -c expm1.c -o expm1.o >/dev/null 2>&1 mv -f .deps/expm1.Tpo .deps/expm1.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT coerce.lo -MD -MP -MF .deps/coerce.Tpo -c -o coerce.lo coerce.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT coerce.lo -MD -MP -MF .deps/coerce.Tpo -c coerce.c -fno-common -DPIC -o .libs/coerce.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT coerce.lo -MD -MP -MF .deps/coerce.Tpo -c coerce.c -o coerce.o >/dev/null 2>&1 mv -f .deps/coerce.Tpo .deps/coerce.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT invhyp.lo -MD -MP -MF .deps/invhyp.Tpo -c -o invhyp.lo invhyp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT invhyp.lo -MD -MP -MF .deps/invhyp.Tpo -c invhyp.c -fno-common -DPIC -o .libs/invhyp.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT invhyp.lo -MD -MP -MF .deps/invhyp.Tpo -c invhyp.c -o invhyp.o >/dev/null 2>&1 mv -f .deps/invhyp.Tpo .deps/invhyp.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT pow_int.lo -MD -MP -MF .deps/pow_int.Tpo -c -o pow_int.lo pow_int.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT pow_int.lo -MD -MP -MF .deps/pow_int.Tpo -c pow_int.c -fno-common -DPIC -o .libs/pow_int.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT pow_int.lo -MD -MP -MF .deps/pow_int.Tpo -c pow_int.c -o pow_int.o >/dev/null 2>&1 mv -f .deps/pow_int.Tpo .deps/pow_int.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT infnan.lo -MD -MP -MF .deps/infnan.Tpo -c -o infnan.lo infnan.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT infnan.lo -MD -MP -MF .deps/infnan.Tpo -c infnan.c -fno-common -DPIC -o .libs/infnan.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT infnan.lo -MD -MP -MF .deps/infnan.Tpo -c infnan.c -o infnan.o >/dev/null 2>&1 mv -f .deps/infnan.Tpo .deps/infnan.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fdiv.lo -MD -MP -MF .deps/fdiv.Tpo -c -o fdiv.lo fdiv.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fdiv.lo -MD -MP -MF .deps/fdiv.Tpo -c fdiv.c -fno-common -DPIC -o .libs/fdiv.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fdiv.lo -MD -MP -MF .deps/fdiv.Tpo -c fdiv.c -o fdiv.o >/dev/null 2>&1 mv -f .deps/fdiv.Tpo .deps/fdiv.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fcmp.lo -MD -MP -MF .deps/fcmp.Tpo -c -o fcmp.lo fcmp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fcmp.lo -MD -MP -MF .deps/fcmp.Tpo -c fcmp.c -fno-common -DPIC -o .libs/fcmp.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fcmp.lo -MD -MP -MF .deps/fcmp.Tpo -c fcmp.c -o fcmp.o >/dev/null 2>&1 mv -f .deps/fcmp.Tpo .deps/fcmp.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT ldfrexp.lo -MD -MP -MF .deps/ldfrexp.Tpo -c -o ldfrexp.lo ldfrexp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT ldfrexp.lo -MD -MP -MF .deps/ldfrexp.Tpo -c ldfrexp.c -fno-common -DPIC -o .libs/ldfrexp.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT ldfrexp.lo -MD -MP -MF .deps/ldfrexp.Tpo -c ldfrexp.c -o ldfrexp.o >/dev/null 2>&1 mv -f .deps/ldfrexp.Tpo .deps/ldfrexp.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslsys.la minmax.lo prec.lo hypot.lo log1p.lo expm1.lo coerce.lo invhyp.lo pow_int.lo infnan.lo fdiv.lo fcmp.lo ldfrexp.lo -lm libtool: link: ar cru .libs/libgslsys.a .libs/minmax.o .libs/prec.o .libs/hypot.o .libs/log1p.o .libs/expm1.o .libs/coerce.o .libs/invhyp.o .libs/pow_int.o .libs/infnan.o .libs/fdiv.o .libs/fcmp.o .libs/ldfrexp.o libtool: link: ranlib .libs/libgslsys.a libtool: link: ( cd ".libs" && rm -f "libgslsys.la" && ln -s "../libgslsys.la" "libgslsys.la" ) Making all in test /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT results.lo -MD -MP -MF .deps/results.Tpo -c -o results.lo results.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT results.lo -MD -MP -MF .deps/results.Tpo -c results.c -fno-common -DPIC -o .libs/results.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT results.lo -MD -MP -MF .deps/results.Tpo -c results.c -o results.o >/dev/null 2>&1 mv -f .deps/results.Tpo .deps/results.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgsltest.la results.lo -lm libtool: link: ar cru .libs/libgsltest.a .libs/results.o libtool: link: ranlib .libs/libgsltest.a libtool: link: ( cd ".libs" && rm -f "libgsltest.la" && ln -s "../libgsltest.la" "libgsltest.la" ) Making all in err /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT error.lo -MD -MP -MF .deps/error.Tpo -c -o error.lo error.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT error.lo -MD -MP -MF .deps/error.Tpo -c error.c -fno-common -DPIC -o .libs/error.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT error.lo -MD -MP -MF .deps/error.Tpo -c error.c -o error.o >/dev/null 2>&1 mv -f .deps/error.Tpo .deps/error.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT stream.lo -MD -MP -MF .deps/stream.Tpo -c -o stream.lo stream.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT stream.lo -MD -MP -MF .deps/stream.Tpo -c stream.c -fno-common -DPIC -o .libs/stream.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT stream.lo -MD -MP -MF .deps/stream.Tpo -c stream.c -o stream.o >/dev/null 2>&1 mv -f .deps/stream.Tpo .deps/stream.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT message.lo -MD -MP -MF .deps/message.Tpo -c -o message.lo message.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT message.lo -MD -MP -MF .deps/message.Tpo -c message.c -fno-common -DPIC -o .libs/message.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT message.lo -MD -MP -MF .deps/message.Tpo -c message.c -o message.o >/dev/null 2>&1 mv -f .deps/message.Tpo .deps/message.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT strerror.lo -MD -MP -MF .deps/strerror.Tpo -c -o strerror.lo strerror.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT strerror.lo -MD -MP -MF .deps/strerror.Tpo -c strerror.c -fno-common -DPIC -o .libs/strerror.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT strerror.lo -MD -MP -MF .deps/strerror.Tpo -c strerror.c -o strerror.o >/dev/null 2>&1 mv -f .deps/strerror.Tpo .deps/strerror.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslerr.la error.lo stream.lo message.lo strerror.lo -lm libtool: link: ar cru .libs/libgslerr.a .libs/error.o .libs/stream.o .libs/message.o .libs/strerror.o libtool: link: ranlib .libs/libgslerr.a libtool: link: ( cd ".libs" && rm -f "libgslerr.la" && ln -s "../libgslerr.la" "libgslerr.la" ) Making all in const make[2]: Nothing to be done for `all'. Making all in complex /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT math.lo -MD -MP -MF .deps/math.Tpo -c -o math.lo math.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT math.lo -MD -MP -MF .deps/math.Tpo -c math.c -fno-common -DPIC -o .libs/math.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT math.lo -MD -MP -MF .deps/math.Tpo -c math.c -o math.o >/dev/null 2>&1 mv -f .deps/math.Tpo .deps/math.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT inline.lo -MD -MP -MF .deps/inline.Tpo -c -o inline.lo inline.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT inline.lo -MD -MP -MF .deps/inline.Tpo -c inline.c -fno-common -DPIC -o .libs/inline.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT inline.lo -MD -MP -MF .deps/inline.Tpo -c inline.c -o inline.o >/dev/null 2>&1 mv -f .deps/inline.Tpo .deps/inline.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslcomplex.la math.lo inline.lo -lm libtool: link: ar cru .libs/libgslcomplex.a .libs/math.o .libs/inline.o libtool: link: ranlib .libs/libgslcomplex.a libtool: link: ( cd ".libs" && rm -f "libgslcomplex.la" && ln -s "../libgslcomplex.la" "libgslcomplex.la" ) Making all in cheb /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT deriv.lo -MD -MP -MF .deps/deriv.Tpo -c -o deriv.lo deriv.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT deriv.lo -MD -MP -MF .deps/deriv.Tpo -c deriv.c -fno-common -DPIC -o .libs/deriv.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT deriv.lo -MD -MP -MF .deps/deriv.Tpo -c deriv.c -o deriv.o >/dev/null 2>&1 mv -f .deps/deriv.Tpo .deps/deriv.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT eval.lo -MD -MP -MF .deps/eval.Tpo -c -o eval.lo eval.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT eval.lo -MD -MP 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-DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT init.lo -MD -MP -MF .deps/init.Tpo -c -o init.lo init.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT init.lo -MD -MP -MF .deps/init.Tpo -c init.c -fno-common -DPIC -o .libs/init.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT init.lo -MD -MP -MF .deps/init.Tpo -c init.c -o init.o >/dev/null 2>&1 mv -f .deps/init.Tpo .deps/init.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT matrix.lo -MD -MP -MF .deps/matrix.Tpo -c -o matrix.lo matrix.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT matrix.lo -MD -MP -MF .deps/matrix.Tpo -c matrix.c -fno-common -DPIC -o .libs/matrix.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT matrix.lo -MD -MP -MF .deps/matrix.Tpo -c matrix.c -o matrix.o >/dev/null 2>&1 mv -f .deps/matrix.Tpo .deps/matrix.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT file.lo -MD -MP -MF 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-DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT swap.lo -MD -MP -MF .deps/swap.Tpo -c swap.c -fno-common -DPIC -o .libs/swap.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT swap.lo -MD -MP -MF .deps/swap.Tpo -c swap.c -o swap.o >/dev/null 2>&1 mv -f .deps/swap.Tpo .deps/swap.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT copy.lo -MD -MP -MF .deps/copy.Tpo -c -o copy.lo copy.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT copy.lo -MD -MP -MF .deps/copy.Tpo -c copy.c -fno-common -DPIC -o .libs/copy.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT copy.lo -MD -MP -MF .deps/copy.Tpo -c copy.c -o copy.o >/dev/null 2>&1 mv -f .deps/copy.Tpo .deps/copy.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT minmax.lo -MD -MP -MF .deps/minmax.Tpo -c -o minmax.lo minmax.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT minmax.lo -MD -MP -MF .deps/minmax.Tpo 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-DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT oper.lo -MD -MP -MF .deps/oper.Tpo -c oper.c -o oper.o >/dev/null 2>&1 mv -f .deps/oper.Tpo .deps/oper.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT getset.lo -MD -MP -MF .deps/getset.Tpo -c -o getset.lo getset.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT getset.lo -MD -MP -MF .deps/getset.Tpo -c getset.c -fno-common -DPIC -o .libs/getset.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT getset.lo -MD -MP -MF .deps/getset.Tpo -c getset.c -o getset.o >/dev/null 2>&1 mv -f .deps/getset.Tpo .deps/getset.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT view.lo -MD -MP -MF .deps/view.Tpo -c -o view.lo view.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT view.lo -MD -MP -MF .deps/view.Tpo -c view.c -fno-common -DPIC -o .libs/view.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT view.lo -MD -MP -MF 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.libs/submatrix.o libtool: link: ranlib .libs/libgslmatrix.a libtool: link: ( cd ".libs" && rm -f "libgslmatrix.la" && ln -s "../libgslmatrix.la" "libgslmatrix.la" ) Making all in permutation /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT init.lo -MD -MP -MF .deps/init.Tpo -c -o init.lo init.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT init.lo -MD -MP -MF .deps/init.Tpo -c init.c -fno-common -DPIC -o .libs/init.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT init.lo -MD -MP -MF .deps/init.Tpo -c init.c -o init.o >/dev/null 2>&1 mv -f .deps/init.Tpo .deps/init.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT file.lo -MD -MP -MF .deps/file.Tpo -c -o file.lo file.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT file.lo -MD -MP -MF .deps/file.Tpo -c file.c -fno-common -DPIC -o .libs/file.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT file.lo -MD -MP -MF .deps/file.Tpo -c file.c -o file.o >/dev/null 2>&1 mv -f .deps/file.Tpo .deps/file.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT permutation.lo -MD -MP -MF .deps/permutation.Tpo -c -o permutation.lo permutation.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT permutation.lo -MD -MP -MF .deps/permutation.Tpo -c permutation.c -fno-common -DPIC -o .libs/permutation.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT permutation.lo -MD -MP -MF .deps/permutation.Tpo -c permutation.c -o permutation.o >/dev/null 2>&1 mv -f .deps/permutation.Tpo .deps/permutation.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT permute.lo -MD -MP -MF .deps/permute.Tpo -c -o permute.lo permute.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT permute.lo -MD -MP -MF .deps/permute.Tpo -c permute.c -fno-common -DPIC -o .libs/permute.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT permute.lo -MD -MP -MF .deps/permute.Tpo -c permute.c -o permute.o >/dev/null 2>&1 mv -f .deps/permute.Tpo .deps/permute.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT canonical.lo -MD -MP -MF .deps/canonical.Tpo -c -o canonical.lo canonical.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT canonical.lo -MD -MP -MF .deps/canonical.Tpo -c canonical.c -fno-common -DPIC -o .libs/canonical.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT canonical.lo -MD -MP -MF .deps/canonical.Tpo -c canonical.c -o canonical.o >/dev/null 2>&1 mv -f .deps/canonical.Tpo .deps/canonical.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT inline.lo -MD -MP -MF .deps/inline.Tpo -c -o inline.lo inline.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT inline.lo -MD -MP -MF .deps/inline.Tpo -c inline.c -fno-common -DPIC -o .libs/inline.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT inline.lo -MD -MP -MF .deps/inline.Tpo -c inline.c -o inline.o >/dev/null 2>&1 mv -f .deps/inline.Tpo .deps/inline.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslpermutation.la init.lo file.lo permutation.lo permute.lo canonical.lo inline.lo -lm libtool: link: ar cru .libs/libgslpermutation.a .libs/init.o .libs/file.o .libs/permutation.o .libs/permute.o .libs/canonical.o .libs/inline.o libtool: link: ranlib .libs/libgslpermutation.a libtool: link: ( cd ".libs" && rm -f "libgslpermutation.la" && ln -s "../libgslpermutation.la" "libgslpermutation.la" ) Making all in combination /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT init.lo -MD -MP -MF .deps/init.Tpo -c -o init.lo init.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT init.lo -MD -MP -MF .deps/init.Tpo -c init.c -fno-common -DPIC -o .libs/init.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT init.lo -MD -MP -MF .deps/init.Tpo -c init.c -o init.o >/dev/null 2>&1 mv -f .deps/init.Tpo .deps/init.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT file.lo -MD -MP -MF .deps/file.Tpo -c -o file.lo file.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT file.lo -MD -MP -MF .deps/file.Tpo -c file.c -fno-common -DPIC -o .libs/file.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT file.lo -MD -MP -MF .deps/file.Tpo -c file.c -o file.o >/dev/null 2>&1 mv -f .deps/file.Tpo .deps/file.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT combination.lo -MD -MP -MF .deps/combination.Tpo -c -o combination.lo combination.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT combination.lo -MD -MP -MF .deps/combination.Tpo -c combination.c -fno-common -DPIC -o .libs/combination.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT combination.lo -MD 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"libgslcombination.la" ) Making all in multiset /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT init.lo -MD -MP -MF .deps/init.Tpo -c -o init.lo init.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT init.lo -MD -MP -MF .deps/init.Tpo -c init.c -fno-common -DPIC -o .libs/init.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT init.lo -MD -MP -MF .deps/init.Tpo -c init.c -o init.o >/dev/null 2>&1 mv -f .deps/init.Tpo .deps/init.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT file.lo -MD -MP -MF .deps/file.Tpo -c -o file.lo file.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT file.lo -MD -MP -MF .deps/file.Tpo -c file.c -fno-common -DPIC -o .libs/file.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT file.lo -MD -MP -MF .deps/file.Tpo -c file.c -o file.o >/dev/null 2>&1 mv -f .deps/file.Tpo .deps/file.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT multiset.lo -MD -MP -MF .deps/multiset.Tpo -c -o multiset.lo multiset.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT multiset.lo -MD -MP -MF .deps/multiset.Tpo -c multiset.c -fno-common -DPIC -o .libs/multiset.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT multiset.lo -MD -MP -MF .deps/multiset.Tpo -c multiset.c -o multiset.o >/dev/null 2>&1 mv -f .deps/multiset.Tpo .deps/multiset.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT inline.lo -MD -MP -MF .deps/inline.Tpo -c -o inline.lo inline.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT inline.lo -MD -MP -MF .deps/inline.Tpo -c inline.c -fno-common -DPIC -o .libs/inline.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT inline.lo -MD -MP -MF .deps/inline.Tpo -c inline.c -o inline.o >/dev/null 2>&1 mv -f .deps/inline.Tpo .deps/inline.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslmultiset.la init.lo file.lo multiset.lo inline.lo -lm libtool: link: ar cru .libs/libgslmultiset.a .libs/init.o .libs/file.o .libs/multiset.o .libs/inline.o libtool: link: ranlib .libs/libgslmultiset.a libtool: link: ( cd ".libs" && rm -f "libgslmultiset.la" && ln -s "../libgslmultiset.la" "libgslmultiset.la" ) Making all in sort /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT sort.lo -MD -MP -MF .deps/sort.Tpo -c -o sort.lo sort.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT sort.lo -MD -MP -MF .deps/sort.Tpo -c sort.c -fno-common -DPIC -o .libs/sort.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT sort.lo -MD -MP -MF .deps/sort.Tpo -c sort.c -o sort.o >/dev/null 2>&1 mv -f .deps/sort.Tpo .deps/sort.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT sortind.lo -MD -MP -MF .deps/sortind.Tpo -c -o sortind.lo sortind.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT sortind.lo -MD -MP -MF .deps/sortind.Tpo -c sortind.c -fno-common -DPIC -o .libs/sortind.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT sortind.lo -MD -MP -MF .deps/sortind.Tpo -c sortind.c -o sortind.o >/dev/null 2>&1 mv -f .deps/sortind.Tpo .deps/sortind.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT sortvec.lo -MD -MP -MF .deps/sortvec.Tpo -c -o sortvec.lo sortvec.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT sortvec.lo -MD -MP -MF .deps/sortvec.Tpo -c sortvec.c -fno-common -DPIC -o .libs/sortvec.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT sortvec.lo -MD -MP -MF .deps/sortvec.Tpo -c sortvec.c -o sortvec.o >/dev/null 2>&1 mv -f .deps/sortvec.Tpo .deps/sortvec.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT sortvecind.lo -MD -MP -MF .deps/sortvecind.Tpo -c -o sortvecind.lo sortvecind.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT sortvecind.lo -MD -MP -MF .deps/sortvecind.Tpo -c sortvecind.c -fno-common -DPIC -o .libs/sortvecind.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT sortvecind.lo -MD -MP -MF .deps/sortvecind.Tpo -c sortvecind.c -o sortvecind.o >/dev/null 2>&1 mv -f .deps/sortvecind.Tpo .deps/sortvecind.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT subset.lo -MD -MP -MF .deps/subset.Tpo -c -o subset.lo subset.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT subset.lo -MD -MP -MF .deps/subset.Tpo -c subset.c -fno-common -DPIC -o .libs/subset.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT subset.lo -MD -MP -MF .deps/subset.Tpo -c subset.c -o subset.o >/dev/null 2>&1 mv -f .deps/subset.Tpo .deps/subset.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT subsetind.lo -MD -MP -MF .deps/subsetind.Tpo -c -o subsetind.lo subsetind.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT subsetind.lo -MD -MP -MF .deps/subsetind.Tpo -c subsetind.c -fno-common -DPIC -o .libs/subsetind.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT subsetind.lo -MD -MP -MF .deps/subsetind.Tpo -c subsetind.c -o subsetind.o >/dev/null 2>&1 mv -f .deps/subsetind.Tpo .deps/subsetind.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslsort.la sort.lo sortind.lo sortvec.lo sortvecind.lo subset.lo subsetind.lo -lm libtool: link: ar cru .libs/libgslsort.a .libs/sort.o .libs/sortind.o .libs/sortvec.o .libs/sortvecind.o .libs/subset.o .libs/subsetind.o libtool: link: ranlib .libs/libgslsort.a libtool: link: ( cd ".libs" && rm -f "libgslsort.la" && ln -s "../libgslsort.la" "libgslsort.la" ) Making all in ieee-utils /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT print.lo -MD -MP -MF .deps/print.Tpo -c -o print.lo print.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT print.lo -MD -MP -MF .deps/print.Tpo -c print.c -fno-common -DPIC -o .libs/print.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT print.lo -MD -MP -MF .deps/print.Tpo -c print.c -o print.o >/dev/null 2>&1 mv -f .deps/print.Tpo .deps/print.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT make_rep.lo -MD -MP -MF .deps/make_rep.Tpo -c -o make_rep.lo make_rep.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT make_rep.lo -MD -MP -MF .deps/make_rep.Tpo -c make_rep.c -fno-common -DPIC -o .libs/make_rep.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT make_rep.lo -MD -MP -MF .deps/make_rep.Tpo -c make_rep.c -o make_rep.o >/dev/null 2>&1 mv -f .deps/make_rep.Tpo .deps/make_rep.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT env.lo -MD -MP -MF .deps/env.Tpo -c -o env.lo env.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT env.lo -MD -MP -MF .deps/env.Tpo -c env.c -fno-common -DPIC -o .libs/env.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT env.lo -MD -MP -MF .deps/env.Tpo -c env.c -o env.o >/dev/null 2>&1 mv -f .deps/env.Tpo .deps/env.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fp.lo -MD -MP -MF .deps/fp.Tpo -c -o fp.lo fp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fp.lo -MD -MP -MF .deps/fp.Tpo -c fp.c -fno-common -DPIC -o .libs/fp.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fp.lo -MD -MP -MF .deps/fp.Tpo -c fp.c -o fp.o >/dev/null 2>&1 mv -f .deps/fp.Tpo .deps/fp.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT read.lo -MD -MP -MF .deps/read.Tpo -c -o read.lo read.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT read.lo -MD -MP -MF .deps/read.Tpo -c read.c -fno-common -DPIC -o .libs/read.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT read.lo -MD -MP -MF .deps/read.Tpo -c read.c -o read.o >/dev/null 2>&1 mv -f .deps/read.Tpo .deps/read.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslieeeutils.la print.lo make_rep.lo env.lo fp.lo read.lo -lm libtool: link: ar cru .libs/libgslieeeutils.a .libs/print.o .libs/make_rep.o .libs/env.o .libs/fp.o .libs/read.o libtool: link: ranlib .libs/libgslieeeutils.a libtool: link: ( cd ".libs" && rm -f "libgslieeeutils.la" && ln -s "../libgslieeeutils.la" "libgslieeeutils.la" ) Making all in cblas /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT sasum.lo -MD -MP -MF .deps/sasum.Tpo -c -o sasum.lo sasum.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT sasum.lo -MD -MP -MF .deps/sasum.Tpo -c sasum.c -fno-common -DPIC -o .libs/sasum.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT sasum.lo -MD -MP -MF .deps/sasum.Tpo -c sasum.c -o sasum.o >/dev/null 2>&1 mv -f 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dtrsm.lo dtrsv.lo dzasum.lo dznrm2.lo caxpy.lo ccopy.lo cdotc_sub.lo cdotu_sub.lo cgbmv.lo cgemm.lo cgemv.lo cgerc.lo cgeru.lo chbmv.lo chemm.lo chemv.lo cher.lo cher2.lo cher2k.lo cherk.lo chpmv.lo chpr.lo chpr2.lo cscal.lo csscal.lo cswap.lo csymm.lo csyr2k.lo csyrk.lo ctbmv.lo ctbsv.lo ctpmv.lo ctpsv.lo ctrmm.lo ctrmv.lo ctrsm.lo ctrsv.lo zaxpy.lo zcopy.lo zdotc_sub.lo zdotu_sub.lo zdscal.lo zgbmv.lo zgemm.lo zgemv.lo zgerc.lo zgeru.lo zhbmv.lo zhemm.lo zhemv.lo zher.lo zher2.lo zher2k.lo zherk.lo zhpmv.lo zhpr.lo zhpr2.lo zscal.lo zswap.lo zsymm.lo zsyr2k.lo zsyrk.lo ztbmv.lo ztbsv.lo ztpmv.lo ztpsv.lo ztrmm.lo ztrmv.lo ztrsm.lo ztrsv.lo icamax.lo idamax.lo isamax.lo izamax.lo xerbla.lo -lm libtool: link: gcc -dynamiclib -Wl,-undefined -Wl,dynamic_lookup -o .libs/libgslcblas.0.dylib .libs/sasum.o .libs/saxpy.o .libs/scasum.o .libs/scnrm2.o .libs/scopy.o .libs/sdot.o .libs/sdsdot.o .libs/sgbmv.o .libs/sgemm.o .libs/sgemv.o .libs/sger.o .libs/snrm2.o .libs/srot.o .libs/srotg.o 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.libs/cher2.o .libs/cher2k.o .libs/cherk.o .libs/chpmv.o .libs/chpr.o .libs/chpr2.o .libs/cscal.o .libs/csscal.o .libs/cswap.o .libs/csymm.o .libs/csyr2k.o .libs/csyrk.o .libs/ctbmv.o .libs/ctbsv.o .libs/ctpmv.o .libs/ctpsv.o .libs/ctrmm.o .libs/ctrmv.o .libs/ctrsm.o .libs/ctrsv.o .libs/zaxpy.o .libs/zcopy.o .libs/zdotc_sub.o .libs/zdotu_sub.o .libs/zdscal.o .libs/zgbmv.o .libs/zgemm.o .libs/zgemv.o .libs/zgerc.o .libs/zgeru.o .libs/zhbmv.o .libs/zhemm.o .libs/zhemv.o .libs/zher.o .libs/zher2.o .libs/zher2k.o .libs/zherk.o .libs/zhpmv.o .libs/zhpr.o .libs/zhpr2.o .libs/zscal.o .libs/zswap.o .libs/zsymm.o .libs/zsyr2k.o .libs/zsyrk.o .libs/ztbmv.o .libs/ztbsv.o .libs/ztpmv.o .libs/ztpsv.o .libs/ztrmm.o .libs/ztrmv.o .libs/ztrsm.o .libs/ztrsv.o .libs/icamax.o .libs/idamax.o .libs/isamax.o .libs/izamax.o .libs/xerbla.o -lm -O2 -install_name /usr/local/lib/libgslcblas.0.dylib -compatibility_version 1 -current_version 1.0 -Wl,-single_module libtool: link: (cd ".libs" && rm -f 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zdotu_sub.o zdscal.o zgbmv.o zgemm.o zgemv.o zgerc.o zgeru.o zhbmv.o zhemm.o zhemv.o zher.o zher2.o zher2k.o zherk.o zhpmv.o zhpr.o zhpr2.o zscal.o zswap.o zsymm.o zsyr2k.o zsyrk.o ztbmv.o ztbsv.o ztpmv.o ztpsv.o ztrmm.o ztrmv.o ztrsm.o ztrsv.o icamax.o idamax.o isamax.o izamax.o xerbla.o libtool: link: ranlib .libs/libgslcblas.a libtool: link: ( cd ".libs" && rm -f "libgslcblas.la" && ln -s "../libgslcblas.la" "libgslcblas.la" ) Making all in blas /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT blas.lo -MD -MP -MF .deps/blas.Tpo -c -o blas.lo blas.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT blas.lo -MD -MP -MF .deps/blas.Tpo -c blas.c -fno-common -DPIC -o .libs/blas.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT blas.lo -MD -MP -MF .deps/blas.Tpo -c blas.c -o blas.o >/dev/null 2>&1 mv -f .deps/blas.Tpo .deps/blas.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslblas.la blas.lo -lm libtool: 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legendre_P.lo legendre_Qn.lo legendre_con.lo legendre_poly.lo log.lo mathieu_angfunc.lo mathieu_charv.lo mathieu_coeff.lo mathieu_radfunc.lo mathieu_workspace.lo poch.lo pow_int.lo psi.lo result.lo shint.lo sinint.lo synchrotron.lo transport.lo trig.lo zeta.lo -lm libtool: link: ar cru .libs/libgslspecfunc.a .libs/airy.o .libs/airy_der.o .libs/airy_zero.o .libs/atanint.o .libs/bessel.o .libs/bessel_I0.o .libs/bessel_I1.o .libs/bessel_In.o .libs/bessel_Inu.o .libs/bessel_J0.o .libs/bessel_J1.o .libs/bessel_Jn.o .libs/bessel_Jnu.o .libs/bessel_K0.o .libs/bessel_K1.o .libs/bessel_Kn.o .libs/bessel_Knu.o .libs/bessel_Y0.o .libs/bessel_Y1.o .libs/bessel_Yn.o .libs/bessel_Ynu.o .libs/bessel_amp_phase.o .libs/bessel_i.o .libs/bessel_j.o .libs/bessel_k.o .libs/bessel_olver.o .libs/bessel_temme.o .libs/bessel_y.o .libs/bessel_zero.o .libs/bessel_sequence.o .libs/beta.o .libs/beta_inc.o .libs/clausen.o .libs/coulomb.o .libs/coupling.o .libs/coulomb_bound.o .libs/dawson.o .libs/debye.o .libs/dilog.o .libs/elementary.o .libs/ellint.o .libs/elljac.o .libs/erfc.o .libs/exp.o .libs/expint.o .libs/expint3.o .libs/fermi_dirac.o .libs/gegenbauer.o .libs/gamma.o .libs/gamma_inc.o .libs/hyperg_0F1.o .libs/hyperg_2F0.o .libs/hyperg_1F1.o .libs/hyperg_2F1.o .libs/hyperg_U.o .libs/hyperg.o .libs/laguerre.o .libs/lambert.o .libs/legendre_H3d.o .libs/legendre_P.o .libs/legendre_Qn.o .libs/legendre_con.o .libs/legendre_poly.o .libs/log.o .libs/mathieu_angfunc.o .libs/mathieu_charv.o .libs/mathieu_coeff.o .libs/mathieu_radfunc.o .libs/mathieu_workspace.o .libs/poch.o .libs/pow_int.o .libs/psi.o .libs/result.o .libs/shint.o .libs/sinint.o .libs/synchrotron.o .libs/transport.o .libs/trig.o .libs/zeta.o libtool: link: ranlib .libs/libgslspecfunc.a libtool: link: ( cd ".libs" && rm -f "libgslspecfunc.la" && ln -s "../libgslspecfunc.la" "libgslspecfunc.la" ) Making all in dht /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT dht.lo -MD -MP -MF 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&& rm -f "libgslrandist.la" && ln -s "../libgslrandist.la" "libgslrandist.la" ) Making all in fft /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT dft.lo -MD -MP -MF .deps/dft.Tpo -c -o dft.lo dft.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT dft.lo -MD -MP -MF .deps/dft.Tpo -c dft.c -fno-common -DPIC -o .libs/dft.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT dft.lo -MD -MP -MF .deps/dft.Tpo -c dft.c -o dft.o >/dev/null 2>&1 mv -f .deps/dft.Tpo .deps/dft.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fft.lo -MD -MP -MF .deps/fft.Tpo -c -o fft.lo fft.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fft.lo -MD -MP -MF .deps/fft.Tpo -c fft.c -fno-common -DPIC -o .libs/fft.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fft.lo -MD -MP -MF .deps/fft.Tpo -c fft.c -o fft.o >/dev/null 2>&1 mv -f .deps/fft.Tpo .deps/fft.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslfft.la dft.lo fft.lo -lm libtool: link: ar cru .libs/libgslfft.a .libs/dft.o .libs/fft.o libtool: link: ranlib .libs/libgslfft.a libtool: link: ( cd ".libs" && rm -f "libgslfft.la" && ln -s "../libgslfft.la" "libgslfft.la" ) Making all in poly /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT dd.lo -MD -MP -MF .deps/dd.Tpo -c -o dd.lo dd.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT dd.lo -MD -MP -MF .deps/dd.Tpo -c dd.c -fno-common -DPIC -o .libs/dd.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT dd.lo -MD -MP -MF .deps/dd.Tpo -c dd.c -o dd.o >/dev/null 2>&1 mv -f .deps/dd.Tpo .deps/dd.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT eval.lo -MD -MP -MF .deps/eval.Tpo -c -o eval.lo eval.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT eval.lo -MD -MP -MF .deps/eval.Tpo -c eval.c -fno-common -DPIC -o .libs/eval.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT eval.lo -MD -MP -MF .deps/eval.Tpo -c eval.c -o eval.o >/dev/null 2>&1 mv -f .deps/eval.Tpo .deps/eval.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT solve_quadratic.lo -MD -MP -MF .deps/solve_quadratic.Tpo -c -o solve_quadratic.lo solve_quadratic.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT solve_quadratic.lo -MD -MP -MF .deps/solve_quadratic.Tpo -c solve_quadratic.c -fno-common -DPIC -o .libs/solve_quadratic.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT solve_quadratic.lo -MD -MP -MF .deps/solve_quadratic.Tpo -c solve_quadratic.c -o solve_quadratic.o >/dev/null 2>&1 mv -f .deps/solve_quadratic.Tpo .deps/solve_quadratic.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT solve_cubic.lo -MD -MP -MF .deps/solve_cubic.Tpo -c -o solve_cubic.lo solve_cubic.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT solve_cubic.lo -MD -MP -MF .deps/solve_cubic.Tpo -c solve_cubic.c -fno-common -DPIC -o .libs/solve_cubic.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT solve_cubic.lo -MD -MP -MF .deps/solve_cubic.Tpo -c solve_cubic.c -o solve_cubic.o >/dev/null 2>&1 mv -f .deps/solve_cubic.Tpo .deps/solve_cubic.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT zsolve_quadratic.lo -MD -MP -MF .deps/zsolve_quadratic.Tpo -c -o zsolve_quadratic.lo zsolve_quadratic.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT zsolve_quadratic.lo -MD -MP -MF .deps/zsolve_quadratic.Tpo -c zsolve_quadratic.c -fno-common -DPIC -o .libs/zsolve_quadratic.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT zsolve_quadratic.lo -MD -MP -MF .deps/zsolve_quadratic.Tpo -c zsolve_quadratic.c -o zsolve_quadratic.o >/dev/null 2>&1 mv -f .deps/zsolve_quadratic.Tpo .deps/zsolve_quadratic.Plo /bin/sh ../libtool --tag=CC 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.deps/zsolve.Tpo .deps/zsolve.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT zsolve_init.lo -MD -MP -MF .deps/zsolve_init.Tpo -c -o zsolve_init.lo zsolve_init.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT zsolve_init.lo -MD -MP -MF .deps/zsolve_init.Tpo -c zsolve_init.c -fno-common -DPIC -o .libs/zsolve_init.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT zsolve_init.lo -MD -MP -MF .deps/zsolve_init.Tpo -c zsolve_init.c -o zsolve_init.o >/dev/null 2>&1 mv -f .deps/zsolve_init.Tpo .deps/zsolve_init.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT deriv.lo -MD -MP -MF .deps/deriv.Tpo -c -o deriv.lo deriv.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT deriv.lo -MD -MP -MF .deps/deriv.Tpo -c deriv.c -fno-common -DPIC -o .libs/deriv.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT deriv.lo -MD -MP -MF .deps/deriv.Tpo -c deriv.c -o deriv.o >/dev/null 2>&1 mv -f .deps/deriv.Tpo .deps/deriv.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslpoly.la dd.lo eval.lo solve_quadratic.lo solve_cubic.lo zsolve_quadratic.lo zsolve_cubic.lo zsolve.lo zsolve_init.lo deriv.lo -lm libtool: link: ar cru .libs/libgslpoly.a .libs/dd.o .libs/eval.o .libs/solve_quadratic.o .libs/solve_cubic.o .libs/zsolve_quadratic.o .libs/zsolve_cubic.o .libs/zsolve.o .libs/zsolve_init.o .libs/deriv.o libtool: link: ranlib .libs/libgslpoly.a libtool: link: ( cd ".libs" && rm -f "libgslpoly.la" && ln -s "../libgslpoly.la" "libgslpoly.la" ) Making all in fit /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT linear.lo -MD -MP -MF .deps/linear.Tpo -c -o linear.lo linear.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT linear.lo -MD -MP -MF .deps/linear.Tpo -c linear.c -fno-common -DPIC -o .libs/linear.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT linear.lo -MD -MP -MF .deps/linear.Tpo -c linear.c -o linear.o >/dev/null 2>&1 mv -f .deps/linear.Tpo .deps/linear.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslfit.la linear.lo -lm libtool: link: ar cru .libs/libgslfit.a .libs/linear.o libtool: link: ranlib .libs/libgslfit.a libtool: link: ( cd ".libs" && rm -f "libgslfit.la" && ln -s "../libgslfit.la" "libgslfit.la" ) Making all in multifit /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT multilinear.lo -MD -MP -MF .deps/multilinear.Tpo -c -o multilinear.lo multilinear.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT multilinear.lo -MD -MP -MF .deps/multilinear.Tpo -c multilinear.c -fno-common -DPIC -o .libs/multilinear.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT multilinear.lo -MD -MP -MF .deps/multilinear.Tpo -c multilinear.c -o multilinear.o >/dev/null 2>&1 mv -f .deps/multilinear.Tpo .deps/multilinear.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc 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-MF .deps/multireg.Tpo -c multireg.c -o multireg.o >/dev/null 2>&1 mv -f .deps/multireg.Tpo .deps/multireg.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslmultifit.la multilinear.lo multiwlinear.lo work.lo lmniel.lo lmder.lo fsolver.lo fdfsolver.lo fdfridge.lo fdjac.lo convergence.lo gradient.lo covar.lo multirobust.lo robust_wfun.lo multireg.lo -lm libtool: link: ar cru .libs/libgslmultifit.a .libs/multilinear.o .libs/multiwlinear.o .libs/work.o .libs/lmniel.o .libs/lmder.o .libs/fsolver.o .libs/fdfsolver.o .libs/fdfridge.o .libs/fdjac.o .libs/convergence.o .libs/gradient.o .libs/covar.o .libs/multirobust.o .libs/robust_wfun.o .libs/multireg.o libtool: link: ranlib .libs/libgslmultifit.a libtool: link: ( cd ".libs" && rm -f "libgslmultifit.la" && ln -s "../libgslmultifit.la" "libgslmultifit.la" ) Making all in multilarge /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT multilarge.lo -MD -MP -MF .deps/multilarge.Tpo -c -o multilarge.lo multilarge.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT multilarge.lo -MD -MP -MF .deps/multilarge.Tpo -c multilarge.c -fno-common -DPIC -o .libs/multilarge.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT multilarge.lo -MD -MP -MF .deps/multilarge.Tpo -c multilarge.c -o multilarge.o >/dev/null 2>&1 mv -f .deps/multilarge.Tpo .deps/multilarge.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT normal.lo -MD -MP -MF .deps/normal.Tpo -c -o normal.lo normal.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT normal.lo -MD -MP -MF .deps/normal.Tpo -c normal.c -fno-common -DPIC -o .libs/normal.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT normal.lo -MD -MP -MF .deps/normal.Tpo -c normal.c -o normal.o >/dev/null 2>&1 mv -f .deps/normal.Tpo .deps/normal.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT tsqr.lo -MD -MP -MF .deps/tsqr.Tpo -c -o tsqr.lo tsqr.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT tsqr.lo -MD -MP -MF .deps/tsqr.Tpo -c tsqr.c -fno-common -DPIC -o .libs/tsqr.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT tsqr.lo -MD -MP -MF .deps/tsqr.Tpo -c tsqr.c -o tsqr.o >/dev/null 2>&1 mv -f .deps/tsqr.Tpo .deps/tsqr.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslmultilarge.la multilarge.lo normal.lo tsqr.lo -lm libtool: link: ar cru .libs/libgslmultilarge.a .libs/multilarge.o .libs/normal.o .libs/tsqr.o libtool: link: ranlib .libs/libgslmultilarge.a libtool: link: ( cd ".libs" && rm -f "libgslmultilarge.la" && ln -s "../libgslmultilarge.la" "libgslmultilarge.la" ) Making all in rstat /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT rstat.lo -MD -MP -MF .deps/rstat.Tpo -c -o rstat.lo rstat.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT rstat.lo -MD -MP -MF .deps/rstat.Tpo -c rstat.c -fno-common -DPIC -o .libs/rstat.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT rstat.lo -MD -MP -MF .deps/rstat.Tpo -c rstat.c -o rstat.o >/dev/null 2>&1 mv -f .deps/rstat.Tpo .deps/rstat.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT rquantile.lo -MD -MP -MF .deps/rquantile.Tpo -c -o rquantile.lo rquantile.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT rquantile.lo -MD -MP -MF .deps/rquantile.Tpo -c rquantile.c -fno-common -DPIC -o .libs/rquantile.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT rquantile.lo -MD -MP -MF .deps/rquantile.Tpo -c rquantile.c -o rquantile.o >/dev/null 2>&1 mv -f .deps/rquantile.Tpo .deps/rquantile.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslrstat.la rstat.lo rquantile.lo -lm libtool: link: ar cru .libs/libgslrstat.a .libs/rstat.o .libs/rquantile.o libtool: link: ranlib .libs/libgslrstat.a libtool: link: ( cd ".libs" && rm -f "libgslrstat.la" && ln -s "../libgslrstat.la" "libgslrstat.la" ) Making all in statistics /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT mean.lo -MD -MP -MF .deps/mean.Tpo -c -o mean.lo mean.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT mean.lo -MD -MP -MF .deps/mean.Tpo -c mean.c -fno-common -DPIC -o .libs/mean.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT mean.lo -MD -MP -MF .deps/mean.Tpo -c mean.c -o mean.o >/dev/null 2>&1 mv -f .deps/mean.Tpo .deps/mean.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT variance.lo -MD -MP -MF .deps/variance.Tpo -c -o variance.lo variance.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT variance.lo -MD -MP -MF .deps/variance.Tpo -c variance.c -fno-common -DPIC -o .libs/variance.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT variance.lo -MD -MP -MF .deps/variance.Tpo -c variance.c -o variance.o >/dev/null 2>&1 mv -f .deps/variance.Tpo .deps/variance.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT absdev.lo -MD -MP -MF .deps/absdev.Tpo -c -o absdev.lo absdev.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT absdev.lo -MD -MP -MF .deps/absdev.Tpo -c absdev.c -fno-common -DPIC -o .libs/absdev.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT absdev.lo -MD -MP -MF .deps/absdev.Tpo -c absdev.c -o absdev.o >/dev/null 2>&1 mv -f .deps/absdev.Tpo .deps/absdev.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT skew.lo -MD -MP -MF .deps/skew.Tpo -c -o skew.lo skew.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT skew.lo -MD -MP -MF .deps/skew.Tpo -c skew.c -fno-common -DPIC -o .libs/skew.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT skew.lo -MD -MP -MF .deps/skew.Tpo -c skew.c -o skew.o >/dev/null 2>&1 mv -f .deps/skew.Tpo .deps/skew.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT kurtosis.lo -MD -MP -MF .deps/kurtosis.Tpo -c -o kurtosis.lo kurtosis.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT kurtosis.lo -MD -MP -MF .deps/kurtosis.Tpo -c kurtosis.c -fno-common -DPIC -o .libs/kurtosis.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT kurtosis.lo -MD -MP -MF .deps/kurtosis.Tpo -c kurtosis.c -o kurtosis.o >/dev/null 2>&1 mv -f .deps/kurtosis.Tpo .deps/kurtosis.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT lag1.lo -MD -MP -MF .deps/lag1.Tpo -c -o lag1.lo lag1.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT lag1.lo -MD -MP -MF .deps/lag1.Tpo -c lag1.c -fno-common -DPIC -o .libs/lag1.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT lag1.lo -MD -MP -MF .deps/lag1.Tpo -c lag1.c -o lag1.o >/dev/null 2>&1 mv -f .deps/lag1.Tpo .deps/lag1.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT p_variance.lo -MD -MP -MF .deps/p_variance.Tpo -c -o p_variance.lo p_variance.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT p_variance.lo -MD -MP -MF .deps/p_variance.Tpo -c p_variance.c -fno-common -DPIC -o .libs/p_variance.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT p_variance.lo -MD -MP -MF .deps/p_variance.Tpo -c p_variance.c -o p_variance.o >/dev/null 2>&1 mv -f .deps/p_variance.Tpo .deps/p_variance.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT minmax.lo -MD -MP -MF .deps/minmax.Tpo -c -o minmax.lo minmax.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT minmax.lo -MD -MP -MF .deps/minmax.Tpo -c minmax.c -fno-common -DPIC -o .libs/minmax.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT minmax.lo -MD -MP -MF .deps/minmax.Tpo -c minmax.c -o minmax.o >/dev/null 2>&1 mv -f .deps/minmax.Tpo .deps/minmax.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT ttest.lo -MD -MP -MF .deps/ttest.Tpo -c -o ttest.lo ttest.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT ttest.lo -MD -MP -MF .deps/ttest.Tpo -c ttest.c -fno-common -DPIC -o .libs/ttest.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT ttest.lo -MD -MP -MF .deps/ttest.Tpo -c ttest.c -o ttest.o >/dev/null 2>&1 mv -f .deps/ttest.Tpo .deps/ttest.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT median.lo -MD -MP -MF .deps/median.Tpo -c -o median.lo median.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT median.lo -MD -MP -MF .deps/median.Tpo -c median.c -fno-common -DPIC -o .libs/median.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT median.lo -MD -MP -MF .deps/median.Tpo -c median.c -o median.o >/dev/null 2>&1 mv -f .deps/median.Tpo .deps/median.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT covariance.lo -MD -MP -MF .deps/covariance.Tpo -c -o covariance.lo covariance.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT covariance.lo -MD -MP -MF .deps/covariance.Tpo -c covariance.c -fno-common -DPIC -o .libs/covariance.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT covariance.lo -MD -MP -MF .deps/covariance.Tpo -c covariance.c -o covariance.o >/dev/null 2>&1 mv -f .deps/covariance.Tpo .deps/covariance.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT quantiles.lo -MD -MP -MF .deps/quantiles.Tpo -c -o quantiles.lo quantiles.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT quantiles.lo -MD -MP -MF .deps/quantiles.Tpo -c quantiles.c -fno-common -DPIC -o .libs/quantiles.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT quantiles.lo -MD -MP -MF .deps/quantiles.Tpo -c quantiles.c -o quantiles.o >/dev/null 2>&1 mv -f .deps/quantiles.Tpo .deps/quantiles.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT wmean.lo -MD -MP -MF .deps/wmean.Tpo -c -o wmean.lo wmean.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT wmean.lo -MD -MP -MF .deps/wmean.Tpo -c wmean.c -fno-common -DPIC -o .libs/wmean.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT wmean.lo -MD -MP -MF .deps/wmean.Tpo -c wmean.c -o wmean.o >/dev/null 2>&1 mv -f .deps/wmean.Tpo .deps/wmean.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT wvariance.lo -MD -MP -MF .deps/wvariance.Tpo -c -o wvariance.lo wvariance.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT wvariance.lo -MD -MP -MF .deps/wvariance.Tpo -c wvariance.c -fno-common -DPIC -o .libs/wvariance.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT wvariance.lo -MD -MP -MF .deps/wvariance.Tpo -c wvariance.c -o wvariance.o >/dev/null 2>&1 mv -f .deps/wvariance.Tpo .deps/wvariance.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT wabsdev.lo -MD -MP -MF .deps/wabsdev.Tpo -c -o wabsdev.lo wabsdev.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT wabsdev.lo -MD -MP -MF .deps/wabsdev.Tpo -c wabsdev.c -fno-common -DPIC -o .libs/wabsdev.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT wabsdev.lo -MD -MP -MF .deps/wabsdev.Tpo -c wabsdev.c -o wabsdev.o >/dev/null 2>&1 mv -f .deps/wabsdev.Tpo .deps/wabsdev.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT wskew.lo -MD -MP -MF .deps/wskew.Tpo -c -o wskew.lo wskew.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT wskew.lo -MD -MP -MF .deps/wskew.Tpo -c wskew.c -fno-common -DPIC -o .libs/wskew.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT wskew.lo -MD -MP -MF .deps/wskew.Tpo -c wskew.c -o wskew.o >/dev/null 2>&1 mv -f .deps/wskew.Tpo .deps/wskew.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT wkurtosis.lo -MD -MP -MF .deps/wkurtosis.Tpo -c -o wkurtosis.lo wkurtosis.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT wkurtosis.lo -MD -MP -MF .deps/wkurtosis.Tpo -c wkurtosis.c -fno-common -DPIC -o .libs/wkurtosis.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT wkurtosis.lo -MD -MP -MF .deps/wkurtosis.Tpo -c wkurtosis.c -o wkurtosis.o >/dev/null 2>&1 mv -f .deps/wkurtosis.Tpo .deps/wkurtosis.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslstatistics.la mean.lo variance.lo absdev.lo skew.lo kurtosis.lo lag1.lo p_variance.lo minmax.lo ttest.lo median.lo covariance.lo quantiles.lo wmean.lo wvariance.lo wabsdev.lo wskew.lo wkurtosis.lo -lm libtool: link: ar cru .libs/libgslstatistics.a .libs/mean.o .libs/variance.o .libs/absdev.o .libs/skew.o .libs/kurtosis.o .libs/lag1.o .libs/p_variance.o .libs/minmax.o .libs/ttest.o .libs/median.o .libs/covariance.o .libs/quantiles.o .libs/wmean.o .libs/wvariance.o .libs/wabsdev.o .libs/wskew.o .libs/wkurtosis.o libtool: link: ranlib .libs/libgslstatistics.a libtool: link: ( cd ".libs" && rm -f "libgslstatistics.la" && ln -s "../libgslstatistics.la" "libgslstatistics.la" ) Making all in siman /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT siman.lo -MD -MP -MF .deps/siman.Tpo -c -o siman.lo siman.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT siman.lo -MD -MP -MF .deps/siman.Tpo -c siman.c -fno-common -DPIC -o .libs/siman.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT siman.lo -MD -MP -MF .deps/siman.Tpo -c siman.c -o siman.o >/dev/null 2>&1 mv -f .deps/siman.Tpo .deps/siman.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslsiman.la siman.lo -lm libtool: link: ar cru .libs/libgslsiman.a .libs/siman.o libtool: link: ranlib .libs/libgslsiman.a libtool: link: ( cd ".libs" && rm -f "libgslsiman.la" && ln -s "../libgslsiman.la" "libgslsiman.la" ) gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT siman_tsp.o -MD -MP -MF .deps/siman_tsp.Tpo -c -o siman_tsp.o siman_tsp.c mv -f .deps/siman_tsp.Tpo .deps/siman_tsp.Po /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o siman_tsp siman_tsp.o libgslsiman.la ../rng/libgslrng.la ../ieee-utils/libgslieeeutils.la ../err/libgslerr.la ../sys/libgslsys.la ../utils/libutils.la -lm libtool: link: gcc -g -O2 -o siman_tsp siman_tsp.o ./.libs/libgslsiman.a ../rng/.libs/libgslrng.a ../ieee-utils/.libs/libgslieeeutils.a ../err/.libs/libgslerr.a ../sys/.libs/libgslsys.a ../utils/.libs/libutils.a -lm Making all in sum /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT levin_u.lo -MD -MP -MF .deps/levin_u.Tpo -c -o levin_u.lo levin_u.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT levin_u.lo -MD -MP -MF .deps/levin_u.Tpo -c levin_u.c -fno-common -DPIC -o .libs/levin_u.o libtool: compile: gcc -DHAVE_CONFIG_H -I. 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qag.lo qags.lo qagp.lo workspace.lo qcheb.lo qawc.lo qmomo.lo qaws.lo qmomof.lo qawo.lo qawf.lo glfixed.lo cquad.lo -lm libtool: link: ar cru .libs/libgslintegration.a .libs/qk15.o .libs/qk21.o .libs/qk31.o .libs/qk41.o .libs/qk51.o .libs/qk61.o .libs/qk.o .libs/qng.o .libs/qag.o .libs/qags.o .libs/qagp.o .libs/workspace.o .libs/qcheb.o .libs/qawc.o .libs/qmomo.o .libs/qaws.o .libs/qmomof.o .libs/qawo.o .libs/qawf.o .libs/glfixed.o .libs/cquad.o libtool: link: ranlib .libs/libgslintegration.a libtool: link: ( cd ".libs" && rm -f "libgslintegration.la" && ln -s "../libgslintegration.la" "libgslintegration.la" ) Making all in interpolation /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT accel.lo -MD -MP -MF .deps/accel.Tpo -c -o accel.lo accel.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT accel.lo -MD -MP -MF .deps/accel.Tpo -c accel.c -fno-common -DPIC -o .libs/accel.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT gnewton.lo -MD -MP -MF .deps/gnewton.Tpo -c gnewton.c -fno-common -DPIC -o .libs/gnewton.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT gnewton.lo -MD -MP -MF .deps/gnewton.Tpo -c gnewton.c -o gnewton.o >/dev/null 2>&1 mv -f .deps/gnewton.Tpo .deps/gnewton.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT dnewton.lo -MD -MP -MF .deps/dnewton.Tpo -c -o dnewton.lo dnewton.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT dnewton.lo -MD -MP -MF .deps/dnewton.Tpo -c dnewton.c -fno-common -DPIC -o .libs/dnewton.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT dnewton.lo -MD -MP -MF .deps/dnewton.Tpo -c dnewton.c -o dnewton.o >/dev/null 2>&1 mv -f .deps/dnewton.Tpo .deps/dnewton.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT broyden.lo -MD -MP -MF .deps/broyden.Tpo -c -o broyden.lo broyden.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT broyden.lo -MD -MP -MF .deps/broyden.Tpo -c broyden.c -fno-common -DPIC -o .libs/broyden.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT broyden.lo -MD -MP -MF .deps/broyden.Tpo -c broyden.c -o broyden.o >/dev/null 2>&1 mv -f .deps/broyden.Tpo .deps/broyden.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT hybrid.lo -MD -MP -MF .deps/hybrid.Tpo -c -o hybrid.lo hybrid.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT hybrid.lo -MD -MP -MF .deps/hybrid.Tpo -c hybrid.c -fno-common -DPIC -o .libs/hybrid.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT hybrid.lo -MD -MP -MF .deps/hybrid.Tpo -c hybrid.c -o hybrid.o >/dev/null 2>&1 mv -f .deps/hybrid.Tpo .deps/hybrid.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT hybridj.lo -MD -MP -MF .deps/hybridj.Tpo -c -o hybridj.lo hybridj.c libtool: compile: 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fsolver.lo -MD -MP -MF .deps/fsolver.Tpo -c -o fsolver.lo fsolver.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fsolver.lo -MD -MP -MF .deps/fsolver.Tpo -c fsolver.c -fno-common -DPIC -o .libs/fsolver.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fsolver.lo -MD -MP -MF .deps/fsolver.Tpo -c fsolver.c -o fsolver.o >/dev/null 2>&1 mv -f .deps/fsolver.Tpo .deps/fsolver.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT golden.lo -MD -MP -MF .deps/golden.Tpo -c -o golden.lo golden.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT golden.lo -MD -MP -MF .deps/golden.Tpo -c golden.c -fno-common -DPIC -o .libs/golden.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT golden.lo -MD -MP -MF .deps/golden.Tpo -c golden.c -o golden.o >/dev/null 2>&1 mv -f .deps/golden.Tpo .deps/golden.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT brent.lo -MD -MP 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-O2 -MT bracketing.lo -MD -MP -MF .deps/bracketing.Tpo -c -o bracketing.lo bracketing.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT bracketing.lo -MD -MP -MF .deps/bracketing.Tpo -c bracketing.c -fno-common -DPIC -o .libs/bracketing.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT bracketing.lo -MD -MP -MF .deps/bracketing.Tpo -c bracketing.c -o bracketing.o >/dev/null 2>&1 mv -f .deps/bracketing.Tpo .deps/bracketing.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT quad_golden.lo -MD -MP -MF .deps/quad_golden.Tpo -c -o quad_golden.lo quad_golden.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT quad_golden.lo -MD -MP -MF .deps/quad_golden.Tpo -c quad_golden.c -fno-common -DPIC -o .libs/quad_golden.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT quad_golden.lo -MD -MP -MF .deps/quad_golden.Tpo -c quad_golden.c -o quad_golden.o >/dev/null 2>&1 mv -f .deps/quad_golden.Tpo .deps/quad_golden.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslmin.la fsolver.lo golden.lo brent.lo convergence.lo bracketing.lo quad_golden.lo -lm libtool: link: ar cru .libs/libgslmin.a .libs/fsolver.o .libs/golden.o .libs/brent.o .libs/convergence.o .libs/bracketing.o .libs/quad_golden.o libtool: link: ranlib .libs/libgslmin.a libtool: link: ( cd ".libs" && rm -f "libgslmin.la" && ln -s "../libgslmin.la" "libgslmin.la" ) Making all in multimin /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fdfminimizer.lo -MD -MP -MF .deps/fdfminimizer.Tpo -c -o fdfminimizer.lo fdfminimizer.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fdfminimizer.lo -MD -MP -MF .deps/fdfminimizer.Tpo -c fdfminimizer.c -fno-common -DPIC -o .libs/fdfminimizer.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fdfminimizer.lo -MD -MP -MF .deps/fdfminimizer.Tpo -c fdfminimizer.c -o fdfminimizer.o >/dev/null 2>&1 mv -f 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-DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT convergence.lo -MD -MP -MF .deps/convergence.Tpo -c convergence.c -fno-common -DPIC -o .libs/convergence.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT convergence.lo -MD -MP -MF .deps/convergence.Tpo -c convergence.c -o convergence.o >/dev/null 2>&1 mv -f .deps/convergence.Tpo .deps/convergence.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT diff.lo -MD -MP -MF .deps/diff.Tpo -c -o diff.lo diff.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT diff.lo -MD -MP -MF .deps/diff.Tpo -c diff.c -fno-common -DPIC -o .libs/diff.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT diff.lo -MD -MP -MF .deps/diff.Tpo -c diff.c -o diff.o >/dev/null 2>&1 mv -f .deps/diff.Tpo .deps/diff.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT vector_bfgs.lo -MD -MP -MF .deps/vector_bfgs.Tpo -c -o vector_bfgs.lo vector_bfgs.c libtool: 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-DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fminimizer.lo -MD -MP -MF .deps/fminimizer.Tpo -c -o fminimizer.lo fminimizer.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fminimizer.lo -MD -MP -MF .deps/fminimizer.Tpo -c fminimizer.c -fno-common -DPIC -o .libs/fminimizer.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fminimizer.lo -MD -MP -MF .deps/fminimizer.Tpo -c fminimizer.c -o fminimizer.o >/dev/null 2>&1 mv -f .deps/fminimizer.Tpo .deps/fminimizer.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT simplex.lo -MD -MP -MF .deps/simplex.Tpo -c -o simplex.lo simplex.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT simplex.lo -MD -MP -MF .deps/simplex.Tpo -c simplex.c -fno-common -DPIC -o .libs/simplex.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT simplex.lo -MD -MP -MF .deps/simplex.Tpo -c simplex.c -o simplex.o >/dev/null 2>&1 mv -f .deps/simplex.Tpo .deps/simplex.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT simplex2.lo -MD -MP -MF .deps/simplex2.Tpo -c -o simplex2.lo simplex2.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT simplex2.lo -MD -MP -MF .deps/simplex2.Tpo -c simplex2.c -fno-common -DPIC -o .libs/simplex2.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT simplex2.lo -MD -MP -MF .deps/simplex2.Tpo -c simplex2.c -o simplex2.o >/dev/null 2>&1 mv -f .deps/simplex2.Tpo .deps/simplex2.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslmultimin.la fdfminimizer.lo steepest_descent.lo conjugate_fr.lo conjugate_pr.lo convergence.lo diff.lo vector_bfgs.lo vector_bfgs2.lo fminimizer.lo simplex.lo simplex2.lo -lm libtool: link: ar cru .libs/libgslmultimin.a .libs/fdfminimizer.o .libs/steepest_descent.o .libs/conjugate_fr.o .libs/conjugate_pr.o .libs/convergence.o .libs/diff.o .libs/vector_bfgs.o .libs/vector_bfgs2.o .libs/fminimizer.o .libs/simplex.o .libs/simplex2.o libtool: link: ranlib .libs/libgslmultimin.a libtool: link: ( cd ".libs" && rm -f "libgslmultimin.la" && ln -s "../libgslmultimin.la" "libgslmultimin.la" ) Making all in monte /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT miser.lo -MD -MP -MF .deps/miser.Tpo -c -o miser.lo miser.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT miser.lo -MD -MP -MF .deps/miser.Tpo -c miser.c -fno-common -DPIC -o .libs/miser.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT miser.lo -MD -MP -MF .deps/miser.Tpo -c miser.c -o miser.o >/dev/null 2>&1 mv -f .deps/miser.Tpo .deps/miser.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT plain.lo -MD -MP -MF .deps/plain.Tpo -c -o plain.lo plain.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT plain.lo -MD -MP -MF .deps/plain.Tpo -c plain.c -fno-common -DPIC -o .libs/plain.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 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.deps/lognormalinv.Tpo .deps/lognormalinv.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT pareto.lo -MD -MP -MF .deps/pareto.Tpo -c -o pareto.lo pareto.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT pareto.lo -MD -MP -MF .deps/pareto.Tpo -c pareto.c -fno-common -DPIC -o .libs/pareto.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT pareto.lo -MD -MP -MF .deps/pareto.Tpo -c pareto.c -o pareto.o >/dev/null 2>&1 mv -f .deps/pareto.Tpo .deps/pareto.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT paretoinv.lo -MD -MP -MF .deps/paretoinv.Tpo -c -o paretoinv.lo paretoinv.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT paretoinv.lo -MD -MP -MF .deps/paretoinv.Tpo -c paretoinv.c -fno-common -DPIC -o .libs/paretoinv.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT paretoinv.lo -MD -MP -MF .deps/paretoinv.Tpo -c paretoinv.c -o paretoinv.o >/dev/null 2>&1 mv -f .deps/paretoinv.Tpo .deps/paretoinv.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT rayleigh.lo -MD -MP -MF .deps/rayleigh.Tpo -c -o rayleigh.lo rayleigh.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT rayleigh.lo -MD -MP -MF .deps/rayleigh.Tpo -c rayleigh.c -fno-common -DPIC -o .libs/rayleigh.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT rayleigh.lo -MD -MP -MF .deps/rayleigh.Tpo -c rayleigh.c -o rayleigh.o >/dev/null 2>&1 mv -f .deps/rayleigh.Tpo .deps/rayleigh.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT rayleighinv.lo -MD -MP -MF .deps/rayleighinv.Tpo -c -o rayleighinv.lo rayleighinv.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT rayleighinv.lo -MD -MP -MF .deps/rayleighinv.Tpo -c rayleighinv.c -fno-common -DPIC -o .libs/rayleighinv.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT rayleighinv.lo -MD 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-O2 -MT weibullinv.lo -MD -MP -MF .deps/weibullinv.Tpo -c weibullinv.c -o weibullinv.o >/dev/null 2>&1 mv -f .deps/weibullinv.Tpo .deps/weibullinv.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT binomial.lo -MD -MP -MF .deps/binomial.Tpo -c -o binomial.lo binomial.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT binomial.lo -MD -MP -MF .deps/binomial.Tpo -c binomial.c -fno-common -DPIC -o .libs/binomial.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT binomial.lo -MD -MP -MF .deps/binomial.Tpo -c binomial.c -o binomial.o >/dev/null 2>&1 mv -f .deps/binomial.Tpo .deps/binomial.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT poisson.lo -MD -MP -MF .deps/poisson.Tpo -c -o poisson.lo poisson.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT poisson.lo -MD -MP -MF .deps/poisson.Tpo -c poisson.c -fno-common -DPIC -o .libs/poisson.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT poisson.lo -MD -MP -MF .deps/poisson.Tpo -c poisson.c -o poisson.o >/dev/null 2>&1 mv -f .deps/poisson.Tpo .deps/poisson.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT geometric.lo -MD -MP -MF .deps/geometric.Tpo -c -o geometric.lo geometric.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT geometric.lo -MD -MP -MF .deps/geometric.Tpo -c geometric.c -fno-common -DPIC -o .libs/geometric.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT geometric.lo -MD -MP -MF .deps/geometric.Tpo -c geometric.c -o geometric.o >/dev/null 2>&1 mv -f .deps/geometric.Tpo .deps/geometric.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT nbinomial.lo -MD -MP -MF .deps/nbinomial.Tpo -c -o nbinomial.lo nbinomial.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT nbinomial.lo -MD -MP -MF .deps/nbinomial.Tpo -c nbinomial.c -fno-common -DPIC -o .libs/nbinomial.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT nbinomial.lo -MD -MP -MF .deps/nbinomial.Tpo -c nbinomial.c -o nbinomial.o >/dev/null 2>&1 mv -f .deps/nbinomial.Tpo .deps/nbinomial.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT pascal.lo -MD -MP -MF .deps/pascal.Tpo -c -o pascal.lo pascal.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT pascal.lo -MD -MP -MF .deps/pascal.Tpo -c pascal.c -fno-common -DPIC -o .libs/pascal.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT pascal.lo -MD -MP -MF .deps/pascal.Tpo -c pascal.c -o pascal.o >/dev/null 2>&1 mv -f .deps/pascal.Tpo .deps/pascal.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT hypergeometric.lo -MD -MP -MF .deps/hypergeometric.Tpo -c -o hypergeometric.lo hypergeometric.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT hypergeometric.lo -MD -MP -MF .deps/hypergeometric.Tpo -c hypergeometric.c -fno-common -DPIC -o .libs/hypergeometric.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT hypergeometric.lo -MD -MP -MF .deps/hypergeometric.Tpo -c hypergeometric.c -o hypergeometric.o >/dev/null 2>&1 mv -f .deps/hypergeometric.Tpo .deps/hypergeometric.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslcdf.la beta.lo betainv.lo cauchy.lo cauchyinv.lo chisq.lo chisqinv.lo exponential.lo exponentialinv.lo exppow.lo fdist.lo fdistinv.lo flat.lo flatinv.lo gamma.lo gammainv.lo gauss.lo gaussinv.lo gumbel1.lo gumbel1inv.lo gumbel2.lo gumbel2inv.lo laplace.lo laplaceinv.lo logistic.lo logisticinv.lo lognormal.lo lognormalinv.lo pareto.lo paretoinv.lo rayleigh.lo rayleighinv.lo tdist.lo tdistinv.lo weibull.lo weibullinv.lo binomial.lo poisson.lo geometric.lo nbinomial.lo pascal.lo hypergeometric.lo -lm libtool: link: ar cru .libs/libgslcdf.a .libs/beta.o .libs/betainv.o .libs/cauchy.o .libs/cauchyinv.o .libs/chisq.o .libs/chisqinv.o .libs/exponential.o .libs/exponentialinv.o .libs/exppow.o .libs/fdist.o .libs/fdistinv.o .libs/flat.o .libs/flatinv.o .libs/gamma.o .libs/gammainv.o .libs/gauss.o .libs/gaussinv.o .libs/gumbel1.o .libs/gumbel1inv.o .libs/gumbel2.o .libs/gumbel2inv.o .libs/laplace.o .libs/laplaceinv.o .libs/logistic.o .libs/logisticinv.o .libs/lognormal.o .libs/lognormalinv.o .libs/pareto.o .libs/paretoinv.o .libs/rayleigh.o .libs/rayleighinv.o .libs/tdist.o .libs/tdistinv.o .libs/weibull.o .libs/weibullinv.o .libs/binomial.o .libs/poisson.o .libs/geometric.o .libs/nbinomial.o .libs/pascal.o .libs/hypergeometric.o libtool: link: ranlib .libs/libgslcdf.a libtool: link: ( cd ".libs" && rm -f "libgslcdf.la" && ln -s "../libgslcdf.la" "libgslcdf.la" ) Making all in wavelet /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT dwt.lo -MD -MP -MF .deps/dwt.Tpo -c -o dwt.lo dwt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT dwt.lo -MD -MP -MF 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-fno-common -DPIC -o .libs/bspline.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT bspline.lo -MD -MP -MF .deps/bspline.Tpo -c bspline.c -o bspline.o >/dev/null 2>&1 mv -f .deps/bspline.Tpo .deps/bspline.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT daubechies.lo -MD -MP -MF .deps/daubechies.Tpo -c -o daubechies.lo daubechies.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT daubechies.lo -MD -MP -MF .deps/daubechies.Tpo -c daubechies.c -fno-common -DPIC -o .libs/daubechies.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT daubechies.lo -MD -MP -MF .deps/daubechies.Tpo -c daubechies.c -o daubechies.o >/dev/null 2>&1 mv -f .deps/daubechies.Tpo .deps/daubechies.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT haar.lo -MD -MP -MF .deps/haar.Tpo -c -o haar.lo haar.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT haar.lo -MD -MP -MF .deps/haar.Tpo -c haar.c -fno-common -DPIC -o .libs/haar.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT haar.lo -MD -MP -MF .deps/haar.Tpo -c haar.c -o haar.o >/dev/null 2>&1 mv -f .deps/haar.Tpo .deps/haar.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslwavelet.la dwt.lo wavelet.lo bspline.lo daubechies.lo haar.lo -lm libtool: link: ar cru .libs/libgslwavelet.a .libs/dwt.o .libs/wavelet.o .libs/bspline.o .libs/daubechies.o .libs/haar.o libtool: link: ranlib .libs/libgslwavelet.a libtool: link: ( cd ".libs" && rm -f "libgslwavelet.la" && ln -s "../libgslwavelet.la" "libgslwavelet.la" ) Making all in bspline /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT bspline.lo -MD -MP -MF .deps/bspline.Tpo -c -o bspline.lo bspline.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT bspline.lo -MD -MP -MF .deps/bspline.Tpo -c bspline.c -fno-common -DPIC -o .libs/bspline.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT bspline.lo -MD -MP -MF .deps/bspline.Tpo -c bspline.c -o bspline.o >/dev/null 2>&1 mv -f .deps/bspline.Tpo .deps/bspline.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT greville.lo -MD -MP -MF .deps/greville.Tpo -c -o greville.lo greville.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT greville.lo -MD -MP -MF .deps/greville.Tpo -c greville.c -fno-common -DPIC -o .libs/greville.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT greville.lo -MD -MP -MF .deps/greville.Tpo -c greville.c -o greville.o >/dev/null 2>&1 mv -f .deps/greville.Tpo .deps/greville.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslbspline.la bspline.lo greville.lo -lm libtool: link: ar cru .libs/libgslbspline.a .libs/bspline.o .libs/greville.o libtool: link: ranlib .libs/libgslbspline.a libtool: link: ( cd ".libs" && rm -f "libgslbspline.la" && ln -s "../libgslbspline.la" "libgslbspline.la" ) Making all in spblas /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT spdgemm.lo -MD -MP -MF .deps/spdgemm.Tpo -c -o spdgemm.lo spdgemm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT spdgemm.lo -MD -MP -MF .deps/spdgemm.Tpo -c spdgemm.c -fno-common -DPIC -o .libs/spdgemm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT spdgemm.lo -MD -MP -MF .deps/spdgemm.Tpo -c spdgemm.c -o spdgemm.o >/dev/null 2>&1 mv -f .deps/spdgemm.Tpo .deps/spdgemm.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT spdgemv.lo -MD -MP -MF .deps/spdgemv.Tpo -c -o spdgemv.lo spdgemv.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT spdgemv.lo -MD -MP -MF .deps/spdgemv.Tpo -c spdgemv.c -fno-common -DPIC -o .libs/spdgemv.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT spdgemv.lo -MD -MP -MF .deps/spdgemv.Tpo -c spdgemv.c -o spdgemv.o >/dev/null 2>&1 mv -f .deps/spdgemv.Tpo .deps/spdgemv.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslspblas.la spdgemm.lo spdgemv.lo -lm libtool: link: ar cru .libs/libgslspblas.a .libs/spdgemm.o .libs/spdgemv.o libtool: link: ranlib .libs/libgslspblas.a libtool: link: ( cd ".libs" && rm -f "libgslspblas.la" && ln -s "../libgslspblas.la" "libgslspblas.la" ) Making all in spmatrix /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT spcompress.lo -MD -MP -MF .deps/spcompress.Tpo -c -o spcompress.lo spcompress.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT spcompress.lo -MD -MP -MF .deps/spcompress.Tpo -c spcompress.c -fno-common -DPIC -o .libs/spcompress.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT spcompress.lo -MD -MP -MF .deps/spcompress.Tpo -c spcompress.c -o spcompress.o >/dev/null 2>&1 mv -f .deps/spcompress.Tpo .deps/spcompress.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT spcopy.lo -MD -MP -MF .deps/spcopy.Tpo -c -o spcopy.lo spcopy.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT spcopy.lo -MD -MP -MF .deps/spcopy.Tpo -c spcopy.c -fno-common -DPIC -o .libs/spcopy.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT spcopy.lo -MD -MP -MF .deps/spcopy.Tpo -c spcopy.c -o spcopy.o >/dev/null 2>&1 mv -f .deps/spcopy.Tpo .deps/spcopy.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT spgetset.lo -MD -MP -MF .deps/spgetset.Tpo -c -o spgetset.lo spgetset.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT spgetset.lo -MD -MP -MF .deps/spgetset.Tpo -c spgetset.c -fno-common -DPIC -o .libs/spgetset.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT spgetset.lo -MD -MP -MF .deps/spgetset.Tpo -c spgetset.c -o spgetset.o >/dev/null 2>&1 mv -f .deps/spgetset.Tpo .deps/spgetset.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT spmatrix.lo -MD -MP -MF .deps/spmatrix.Tpo -c -o spmatrix.lo spmatrix.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT spmatrix.lo -MD -MP -MF .deps/spmatrix.Tpo -c spmatrix.c -fno-common -DPIC -o .libs/spmatrix.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT spmatrix.lo -MD -MP -MF .deps/spmatrix.Tpo -c spmatrix.c -o spmatrix.o >/dev/null 2>&1 mv -f .deps/spmatrix.Tpo .deps/spmatrix.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT spoper.lo -MD -MP -MF .deps/spoper.Tpo -c -o spoper.lo spoper.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT spoper.lo -MD -MP -MF .deps/spoper.Tpo -c spoper.c -fno-common -DPIC -o .libs/spoper.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT spoper.lo -MD -MP -MF .deps/spoper.Tpo -c spoper.c -o spoper.o >/dev/null 2>&1 mv -f .deps/spoper.Tpo .deps/spoper.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT spprop.lo -MD -MP -MF .deps/spprop.Tpo -c -o spprop.lo spprop.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT spprop.lo -MD -MP -MF .deps/spprop.Tpo -c spprop.c -fno-common -DPIC -o .libs/spprop.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT spprop.lo -MD -MP -MF .deps/spprop.Tpo -c spprop.c -o spprop.o >/dev/null 2>&1 mv -f .deps/spprop.Tpo .deps/spprop.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT spswap.lo -MD -MP -MF .deps/spswap.Tpo -c -o spswap.lo spswap.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT spswap.lo -MD -MP -MF .deps/spswap.Tpo -c spswap.c -fno-common -DPIC -o .libs/spswap.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT spswap.lo -MD -MP -MF .deps/spswap.Tpo -c spswap.c -o spswap.o >/dev/null 2>&1 mv -f .deps/spswap.Tpo .deps/spswap.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslspmatrix.la spcompress.lo spcopy.lo spgetset.lo spmatrix.lo spoper.lo spprop.lo spswap.lo -lm libtool: link: ar cru .libs/libgslspmatrix.a .libs/spcompress.o .libs/spcopy.o .libs/spgetset.o .libs/spmatrix.o .libs/spoper.o .libs/spprop.o .libs/spswap.o libtool: link: ranlib .libs/libgslspmatrix.a libtool: link: ( cd ".libs" && rm -f "libgslspmatrix.la" && ln -s "../libgslspmatrix.la" "libgslspmatrix.la" ) Making all in splinalg /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT itersolve.lo -MD -MP -MF .deps/itersolve.Tpo -c -o itersolve.lo itersolve.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT itersolve.lo -MD -MP -MF .deps/itersolve.Tpo -c itersolve.c -fno-common -DPIC -o .libs/itersolve.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT itersolve.lo -MD -MP -MF .deps/itersolve.Tpo -c itersolve.c -o itersolve.o >/dev/null 2>&1 mv -f .deps/itersolve.Tpo .deps/itersolve.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT gmres.lo -MD -MP -MF .deps/gmres.Tpo -c -o gmres.lo gmres.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT gmres.lo -MD -MP -MF .deps/gmres.Tpo -c gmres.c -fno-common -DPIC -o .libs/gmres.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT gmres.lo -MD -MP -MF .deps/gmres.Tpo -c gmres.c -o gmres.o >/dev/null 2>&1 mv -f .deps/gmres.Tpo .deps/gmres.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslsplinalg.la itersolve.lo gmres.lo -lm libtool: link: ar cru .libs/libgslsplinalg.a .libs/itersolve.o .libs/gmres.o libtool: link: ranlib .libs/libgslsplinalg.a libtool: link: ( cd ".libs" && rm -f "libgslsplinalg.la" && ln -s "../libgslsplinalg.la" "libgslsplinalg.la" ) Making all in doc Making all in . make[3]: Nothing to be done for `all-am'. Making all in examples make[3]: Nothing to be done for `all'. /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -g -O2 -MT version.lo -MD -MP -MF .deps/version.Tpo -c -o version.lo version.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -g -O2 -MT version.lo -MD -MP -MF .deps/version.Tpo -c version.c -fno-common -DPIC -o .libs/version.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -g -O2 -MT version.lo -MD -MP -MF .deps/version.Tpo -c version.c -o version.o >/dev/null 2>&1 mv -f .deps/version.Tpo .deps/version.Plo /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -version-info 19:0:0 -o libgsl.la -rpath /usr/local/lib version.lo block/libgslblock.la blas/libgslblas.la bspline/libgslbspline.la complex/libgslcomplex.la cheb/libgslcheb.la dht/libgsldht.la diff/libgsldiff.la deriv/libgslderiv.la eigen/libgsleigen.la err/libgslerr.la fft/libgslfft.la fit/libgslfit.la histogram/libgslhistogram.la ieee-utils/libgslieeeutils.la integration/libgslintegration.la interpolation/libgslinterpolation.la linalg/libgsllinalg.la matrix/libgslmatrix.la min/libgslmin.la monte/libgslmonte.la multifit/libgslmultifit.la multilarge/libgslmultilarge.la multimin/libgslmultimin.la multiroots/libgslmultiroots.la ntuple/libgslntuple.la ode-initval/libgslodeiv.la ode-initval2/libgslodeiv2.la permutation/libgslpermutation.la combination/libgslcombination.la multiset/libgslmultiset.la poly/libgslpoly.la qrng/libgslqrng.la randist/libgslrandist.la rng/libgslrng.la roots/libgslroots.la siman/libgslsiman.la sort/libgslsort.la specfunc/libgslspecfunc.la rstat/libgslrstat.la statistics/libgslstatistics.la sum/libgslsum.la sys/libgslsys.la test/libgsltest.la utils/libutils.la vector/libgslvector.la cdf/libgslcdf.la wavelet/libgslwavelet.la spmatrix/libgslspmatrix.la spblas/libgslspblas.la splinalg/libgslsplinalg.la -lm libtool: link: gcc -dynamiclib -Wl,-undefined -Wl,dynamic_lookup -o .libs/libgsl.19.dylib .libs/version.o -Wl,-force_load,block/.libs/libgslblock.a -Wl,-force_load,blas/.libs/libgslblas.a -Wl,-force_load,bspline/.libs/libgslbspline.a -Wl,-force_load,complex/.libs/libgslcomplex.a -Wl,-force_load,cheb/.libs/libgslcheb.a -Wl,-force_load,dht/.libs/libgsldht.a -Wl,-force_load,diff/.libs/libgsldiff.a -Wl,-force_load,deriv/.libs/libgslderiv.a -Wl,-force_load,eigen/.libs/libgsleigen.a -Wl,-force_load,err/.libs/libgslerr.a -Wl,-force_load,fft/.libs/libgslfft.a -Wl,-force_load,fit/.libs/libgslfit.a -Wl,-force_load,histogram/.libs/libgslhistogram.a -Wl,-force_load,ieee-utils/.libs/libgslieeeutils.a -Wl,-force_load,integration/.libs/libgslintegration.a -Wl,-force_load,interpolation/.libs/libgslinterpolation.a -Wl,-force_load,linalg/.libs/libgsllinalg.a -Wl,-force_load,matrix/.libs/libgslmatrix.a -Wl,-force_load,min/.libs/libgslmin.a -Wl,-force_load,monte/.libs/libgslmonte.a -Wl,-force_load,multifit/.libs/libgslmultifit.a -Wl,-force_load,multilarge/.libs/libgslmultilarge.a -Wl,-force_load,multimin/.libs/libgslmultimin.a -Wl,-force_load,multiroots/.libs/libgslmultiroots.a -Wl,-force_load,ntuple/.libs/libgslntuple.a -Wl,-force_load,ode-initval/.libs/libgslodeiv.a -Wl,-force_load,ode-initval2/.libs/libgslodeiv2.a -Wl,-force_load,permutation/.libs/libgslpermutation.a -Wl,-force_load,combination/.libs/libgslcombination.a -Wl,-force_load,multiset/.libs/libgslmultiset.a -Wl,-force_load,poly/.libs/libgslpoly.a -Wl,-force_load,qrng/.libs/libgslqrng.a -Wl,-force_load,randist/.libs/libgslrandist.a -Wl,-force_load,rng/.libs/libgslrng.a -Wl,-force_load,roots/.libs/libgslroots.a -Wl,-force_load,siman/.libs/libgslsiman.a -Wl,-force_load,sort/.libs/libgslsort.a -Wl,-force_load,specfunc/.libs/libgslspecfunc.a -Wl,-force_load,rstat/.libs/libgslrstat.a -Wl,-force_load,statistics/.libs/libgslstatistics.a -Wl,-force_load,sum/.libs/libgslsum.a -Wl,-force_load,sys/.libs/libgslsys.a -Wl,-force_load,test/.libs/libgsltest.a -Wl,-force_load,utils/.libs/libutils.a -Wl,-force_load,vector/.libs/libgslvector.a -Wl,-force_load,cdf/.libs/libgslcdf.a -Wl,-force_load,wavelet/.libs/libgslwavelet.a -Wl,-force_load,spmatrix/.libs/libgslspmatrix.a -Wl,-force_load,spblas/.libs/libgslspblas.a -Wl,-force_load,splinalg/.libs/libgslsplinalg.a -lm -O2 -install_name /usr/local/lib/libgsl.19.dylib -compatibility_version 20 -current_version 20.0 -Wl,-single_module libtool: link: (cd ".libs" && rm -f "libgsl.dylib" && ln -s "libgsl.19.dylib" "libgsl.dylib") libtool: link: (cd .libs/libgsl.lax/libgslblock.a && ar x "/Users/Sam/gsl-2.1/block/.libs/libgslblock.a") libtool: link: (cd .libs/libgsl.lax/libgslblas.a && ar x "/Users/Sam/gsl-2.1/blas/.libs/libgslblas.a") libtool: link: (cd .libs/libgsl.lax/libgslbspline.a && ar x "/Users/Sam/gsl-2.1/bspline/.libs/libgslbspline.a") libtool: link: (cd .libs/libgsl.lax/libgslcomplex.a && ar x "/Users/Sam/gsl-2.1/complex/.libs/libgslcomplex.a") libtool: link: (cd .libs/libgsl.lax/libgslcheb.a && ar x "/Users/Sam/gsl-2.1/cheb/.libs/libgslcheb.a") libtool: link: (cd .libs/libgsl.lax/libgsldht.a && ar x "/Users/Sam/gsl-2.1/dht/.libs/libgsldht.a") libtool: link: (cd .libs/libgsl.lax/libgsldiff.a && ar x "/Users/Sam/gsl-2.1/diff/.libs/libgsldiff.a") libtool: link: (cd .libs/libgsl.lax/libgslderiv.a && ar x "/Users/Sam/gsl-2.1/deriv/.libs/libgslderiv.a") libtool: link: (cd .libs/libgsl.lax/libgsleigen.a && ar x "/Users/Sam/gsl-2.1/eigen/.libs/libgsleigen.a") libtool: link: (cd .libs/libgsl.lax/libgslerr.a && ar x "/Users/Sam/gsl-2.1/err/.libs/libgslerr.a") libtool: link: (cd .libs/libgsl.lax/libgslfft.a && ar x "/Users/Sam/gsl-2.1/fft/.libs/libgslfft.a") libtool: link: (cd .libs/libgsl.lax/libgslfit.a && ar x "/Users/Sam/gsl-2.1/fit/.libs/libgslfit.a") libtool: link: (cd .libs/libgsl.lax/libgslhistogram.a && ar x "/Users/Sam/gsl-2.1/histogram/.libs/libgslhistogram.a") libtool: link: (cd .libs/libgsl.lax/libgslieeeutils.a && ar x "/Users/Sam/gsl-2.1/ieee-utils/.libs/libgslieeeutils.a") libtool: link: (cd .libs/libgsl.lax/libgslintegration.a && ar x "/Users/Sam/gsl-2.1/integration/.libs/libgslintegration.a") libtool: link: (cd .libs/libgsl.lax/libgslinterpolation.a && ar x "/Users/Sam/gsl-2.1/interpolation/.libs/libgslinterpolation.a") libtool: link: (cd .libs/libgsl.lax/libgsllinalg.a && ar x "/Users/Sam/gsl-2.1/linalg/.libs/libgsllinalg.a") libtool: link: (cd .libs/libgsl.lax/libgslmatrix.a && ar x "/Users/Sam/gsl-2.1/matrix/.libs/libgslmatrix.a") libtool: link: (cd .libs/libgsl.lax/libgslmin.a && ar x "/Users/Sam/gsl-2.1/min/.libs/libgslmin.a") libtool: link: (cd .libs/libgsl.lax/libgslmonte.a && ar x "/Users/Sam/gsl-2.1/monte/.libs/libgslmonte.a") libtool: link: (cd .libs/libgsl.lax/libgslmultifit.a && ar x "/Users/Sam/gsl-2.1/multifit/.libs/libgslmultifit.a") libtool: link: (cd .libs/libgsl.lax/libgslmultilarge.a && ar x "/Users/Sam/gsl-2.1/multilarge/.libs/libgslmultilarge.a") libtool: link: (cd .libs/libgsl.lax/libgslmultimin.a && ar x "/Users/Sam/gsl-2.1/multimin/.libs/libgslmultimin.a") libtool: link: (cd .libs/libgsl.lax/libgslmultiroots.a && ar x "/Users/Sam/gsl-2.1/multiroots/.libs/libgslmultiroots.a") libtool: link: (cd .libs/libgsl.lax/libgslntuple.a && ar x "/Users/Sam/gsl-2.1/ntuple/.libs/libgslntuple.a") libtool: link: (cd .libs/libgsl.lax/libgslodeiv.a && ar x "/Users/Sam/gsl-2.1/ode-initval/.libs/libgslodeiv.a") libtool: link: (cd .libs/libgsl.lax/libgslodeiv2.a && ar x "/Users/Sam/gsl-2.1/ode-initval2/.libs/libgslodeiv2.a") libtool: link: (cd .libs/libgsl.lax/libgslpermutation.a && ar x "/Users/Sam/gsl-2.1/permutation/.libs/libgslpermutation.a") libtool: link: (cd .libs/libgsl.lax/libgslcombination.a && ar x "/Users/Sam/gsl-2.1/combination/.libs/libgslcombination.a") libtool: link: (cd .libs/libgsl.lax/libgslmultiset.a && ar x "/Users/Sam/gsl-2.1/multiset/.libs/libgslmultiset.a") libtool: link: (cd .libs/libgsl.lax/libgslpoly.a && ar x "/Users/Sam/gsl-2.1/poly/.libs/libgslpoly.a") libtool: link: (cd .libs/libgsl.lax/libgslqrng.a && ar x "/Users/Sam/gsl-2.1/qrng/.libs/libgslqrng.a") libtool: link: (cd .libs/libgsl.lax/libgslrandist.a && ar x "/Users/Sam/gsl-2.1/randist/.libs/libgslrandist.a") libtool: link: (cd .libs/libgsl.lax/libgslrng.a && ar x "/Users/Sam/gsl-2.1/rng/.libs/libgslrng.a") libtool: link: (cd .libs/libgsl.lax/libgslroots.a && ar x "/Users/Sam/gsl-2.1/roots/.libs/libgslroots.a") libtool: link: (cd .libs/libgsl.lax/libgslsiman.a && ar x "/Users/Sam/gsl-2.1/siman/.libs/libgslsiman.a") libtool: link: (cd .libs/libgsl.lax/libgslsort.a && ar x "/Users/Sam/gsl-2.1/sort/.libs/libgslsort.a") libtool: link: (cd .libs/libgsl.lax/libgslspecfunc.a && ar x "/Users/Sam/gsl-2.1/specfunc/.libs/libgslspecfunc.a") libtool: link: (cd .libs/libgsl.lax/libgslrstat.a && ar x "/Users/Sam/gsl-2.1/rstat/.libs/libgslrstat.a") libtool: link: (cd .libs/libgsl.lax/libgslstatistics.a && ar x "/Users/Sam/gsl-2.1/statistics/.libs/libgslstatistics.a") libtool: link: (cd .libs/libgsl.lax/libgslsum.a && ar x "/Users/Sam/gsl-2.1/sum/.libs/libgslsum.a") libtool: link: (cd .libs/libgsl.lax/libgslsys.a && ar x "/Users/Sam/gsl-2.1/sys/.libs/libgslsys.a") libtool: link: (cd .libs/libgsl.lax/libgsltest.a && ar x "/Users/Sam/gsl-2.1/test/.libs/libgsltest.a") libtool: link: (cd .libs/libgsl.lax/libutils.a && ar x "/Users/Sam/gsl-2.1/utils/.libs/libutils.a") libtool: link: (cd .libs/libgsl.lax/libgslvector.a && ar x "/Users/Sam/gsl-2.1/vector/.libs/libgslvector.a") libtool: link: (cd .libs/libgsl.lax/libgslcdf.a && ar x "/Users/Sam/gsl-2.1/cdf/.libs/libgslcdf.a") libtool: link: (cd .libs/libgsl.lax/libgslwavelet.a && ar x "/Users/Sam/gsl-2.1/wavelet/.libs/libgslwavelet.a") libtool: link: (cd .libs/libgsl.lax/libgslspmatrix.a && ar x "/Users/Sam/gsl-2.1/spmatrix/.libs/libgslspmatrix.a") libtool: link: (cd .libs/libgsl.lax/libgslspblas.a && ar x "/Users/Sam/gsl-2.1/spblas/.libs/libgslspblas.a") libtool: link: (cd .libs/libgsl.lax/libgslsplinalg.a && ar x "/Users/Sam/gsl-2.1/splinalg/.libs/libgslsplinalg.a") copying selected object files to avoid basename conflicts... libtool: link: ln .libs/libgsl.lax/libgslcheb.a/init.o .libs/libgsl.lax/lt1-init.o || cp .libs/libgsl.lax/libgslcheb.a/init.o .libs/libgsl.lax/lt1-init.o libtool: link: ln .libs/libgsl.lax/libgslderiv.a/deriv.o .libs/libgsl.lax/lt2-deriv.o || cp .libs/libgsl.lax/libgslderiv.a/deriv.o .libs/libgsl.lax/lt2-deriv.o libtool: link: ln .libs/libgsl.lax/libgslhistogram.a/file.o .libs/libgsl.lax/lt3-file.o || cp .libs/libgsl.lax/libgslhistogram.a/file.o .libs/libgsl.lax/lt3-file.o libtool: link: ln .libs/libgsl.lax/libgslhistogram.a/init.o .libs/libgsl.lax/lt4-init.o || cp .libs/libgsl.lax/libgslhistogram.a/init.o .libs/libgsl.lax/lt4-init.o libtool: link: ln .libs/libgsl.lax/libgslinterpolation.a/inline.o .libs/libgsl.lax/lt5-inline.o || cp .libs/libgsl.lax/libgslinterpolation.a/inline.o .libs/libgsl.lax/lt5-inline.o libtool: link: ln .libs/libgsl.lax/libgslinterpolation.a/linear.o .libs/libgsl.lax/lt6-linear.o || cp .libs/libgsl.lax/libgslinterpolation.a/linear.o .libs/libgsl.lax/lt6-linear.o libtool: link: ln .libs/libgsl.lax/libgsllinalg.a/inline.o .libs/libgsl.lax/lt7-inline.o || cp .libs/libgsl.lax/libgsllinalg.a/inline.o .libs/libgsl.lax/lt7-inline.o libtool: link: ln .libs/libgsl.lax/libgslmatrix.a/copy.o .libs/libgsl.lax/lt8-copy.o || cp .libs/libgsl.lax/libgslmatrix.a/copy.o .libs/libgsl.lax/lt8-copy.o libtool: link: ln .libs/libgsl.lax/libgslmatrix.a/file.o .libs/libgsl.lax/lt9-file.o || cp .libs/libgsl.lax/libgslmatrix.a/file.o .libs/libgsl.lax/lt9-file.o libtool: link: ln .libs/libgsl.lax/libgslmatrix.a/init.o .libs/libgsl.lax/lt10-init.o || cp .libs/libgsl.lax/libgslmatrix.a/init.o .libs/libgsl.lax/lt10-init.o libtool: link: ln .libs/libgsl.lax/libgslmatrix.a/oper.o .libs/libgsl.lax/lt11-oper.o || cp .libs/libgsl.lax/libgslmatrix.a/oper.o .libs/libgsl.lax/lt11-oper.o libtool: link: ln .libs/libgsl.lax/libgslmultifit.a/convergence.o .libs/libgsl.lax/lt12-convergence.o || cp .libs/libgsl.lax/libgslmultifit.a/convergence.o .libs/libgsl.lax/lt12-convergence.o libtool: link: ln .libs/libgsl.lax/libgslmultifit.a/fsolver.o .libs/libgsl.lax/lt13-fsolver.o || cp .libs/libgsl.lax/libgslmultifit.a/fsolver.o .libs/libgsl.lax/lt13-fsolver.o libtool: link: ln .libs/libgsl.lax/libgslmultimin.a/convergence.o .libs/libgsl.lax/lt14-convergence.o || cp .libs/libgsl.lax/libgslmultimin.a/convergence.o .libs/libgsl.lax/lt14-convergence.o libtool: link: ln .libs/libgsl.lax/libgslmultimin.a/diff.o .libs/libgsl.lax/lt15-diff.o || cp .libs/libgsl.lax/libgslmultimin.a/diff.o .libs/libgsl.lax/lt15-diff.o libtool: link: ln .libs/libgsl.lax/libgslmultiroots.a/convergence.o .libs/libgsl.lax/lt16-convergence.o || cp .libs/libgsl.lax/libgslmultiroots.a/convergence.o .libs/libgsl.lax/lt16-convergence.o libtool: link: ln .libs/libgsl.lax/libgslmultiroots.a/fdfsolver.o .libs/libgsl.lax/lt17-fdfsolver.o || cp .libs/libgsl.lax/libgslmultiroots.a/fdfsolver.o .libs/libgsl.lax/lt17-fdfsolver.o libtool: link: ln .libs/libgsl.lax/libgslmultiroots.a/fdjac.o .libs/libgsl.lax/lt18-fdjac.o || cp .libs/libgsl.lax/libgslmultiroots.a/fdjac.o .libs/libgsl.lax/lt18-fdjac.o libtool: link: ln .libs/libgsl.lax/libgslmultiroots.a/fsolver.o .libs/libgsl.lax/lt19-fsolver.o || cp .libs/libgsl.lax/libgslmultiroots.a/fsolver.o .libs/libgsl.lax/lt19-fsolver.o libtool: link: ln .libs/libgsl.lax/libgslodeiv2.a/bsimp.o .libs/libgsl.lax/lt20-bsimp.o || cp .libs/libgsl.lax/libgslodeiv2.a/bsimp.o .libs/libgsl.lax/lt20-bsimp.o libtool: link: ln .libs/libgsl.lax/libgslodeiv2.a/control.o .libs/libgsl.lax/lt21-control.o || cp .libs/libgsl.lax/libgslodeiv2.a/control.o .libs/libgsl.lax/lt21-control.o libtool: link: ln .libs/libgsl.lax/libgslodeiv2.a/cscal.o .libs/libgsl.lax/lt22-cscal.o || cp .libs/libgsl.lax/libgslodeiv2.a/cscal.o .libs/libgsl.lax/lt22-cscal.o libtool: link: ln .libs/libgsl.lax/libgslodeiv2.a/cstd.o .libs/libgsl.lax/lt23-cstd.o || cp .libs/libgsl.lax/libgslodeiv2.a/cstd.o .libs/libgsl.lax/lt23-cstd.o libtool: link: ln .libs/libgsl.lax/libgslodeiv2.a/evolve.o .libs/libgsl.lax/lt24-evolve.o || cp .libs/libgsl.lax/libgslodeiv2.a/evolve.o .libs/libgsl.lax/lt24-evolve.o libtool: link: ln .libs/libgsl.lax/libgslodeiv2.a/rk2.o .libs/libgsl.lax/lt25-rk2.o || cp .libs/libgsl.lax/libgslodeiv2.a/rk2.o .libs/libgsl.lax/lt25-rk2.o libtool: link: ln .libs/libgsl.lax/libgslodeiv2.a/rk2imp.o .libs/libgsl.lax/lt26-rk2imp.o || cp .libs/libgsl.lax/libgslodeiv2.a/rk2imp.o .libs/libgsl.lax/lt26-rk2imp.o libtool: link: ln .libs/libgsl.lax/libgslodeiv2.a/rk4.o .libs/libgsl.lax/lt27-rk4.o || cp .libs/libgsl.lax/libgslodeiv2.a/rk4.o .libs/libgsl.lax/lt27-rk4.o libtool: link: ln .libs/libgsl.lax/libgslodeiv2.a/rk4imp.o .libs/libgsl.lax/lt28-rk4imp.o || cp .libs/libgsl.lax/libgslodeiv2.a/rk4imp.o .libs/libgsl.lax/lt28-rk4imp.o libtool: link: ln .libs/libgsl.lax/libgslodeiv2.a/rk8pd.o .libs/libgsl.lax/lt29-rk8pd.o || cp .libs/libgsl.lax/libgslodeiv2.a/rk8pd.o .libs/libgsl.lax/lt29-rk8pd.o libtool: link: ln .libs/libgsl.lax/libgslodeiv2.a/rkck.o .libs/libgsl.lax/lt30-rkck.o || cp .libs/libgsl.lax/libgslodeiv2.a/rkck.o .libs/libgsl.lax/lt30-rkck.o libtool: link: ln .libs/libgsl.lax/libgslodeiv2.a/rkf45.o .libs/libgsl.lax/lt31-rkf45.o || cp .libs/libgsl.lax/libgslodeiv2.a/rkf45.o .libs/libgsl.lax/lt31-rkf45.o libtool: link: ln .libs/libgsl.lax/libgslodeiv2.a/step.o .libs/libgsl.lax/lt32-step.o || cp .libs/libgsl.lax/libgslodeiv2.a/step.o .libs/libgsl.lax/lt32-step.o libtool: link: ln .libs/libgsl.lax/libgslpermutation.a/file.o .libs/libgsl.lax/lt33-file.o || cp .libs/libgsl.lax/libgslpermutation.a/file.o .libs/libgsl.lax/lt33-file.o libtool: link: ln .libs/libgsl.lax/libgslpermutation.a/init.o .libs/libgsl.lax/lt34-init.o || cp .libs/libgsl.lax/libgslpermutation.a/init.o .libs/libgsl.lax/lt34-init.o libtool: link: ln .libs/libgsl.lax/libgslpermutation.a/inline.o .libs/libgsl.lax/lt35-inline.o || cp .libs/libgsl.lax/libgslpermutation.a/inline.o .libs/libgsl.lax/lt35-inline.o libtool: link: ln .libs/libgsl.lax/libgslcombination.a/file.o .libs/libgsl.lax/lt36-file.o || cp .libs/libgsl.lax/libgslcombination.a/file.o .libs/libgsl.lax/lt36-file.o libtool: link: ln .libs/libgsl.lax/libgslcombination.a/init.o .libs/libgsl.lax/lt37-init.o || cp .libs/libgsl.lax/libgslcombination.a/init.o .libs/libgsl.lax/lt37-init.o libtool: link: ln .libs/libgsl.lax/libgslcombination.a/inline.o .libs/libgsl.lax/lt38-inline.o || cp .libs/libgsl.lax/libgslcombination.a/inline.o .libs/libgsl.lax/lt38-inline.o libtool: link: ln .libs/libgsl.lax/libgslmultiset.a/file.o .libs/libgsl.lax/lt39-file.o || cp .libs/libgsl.lax/libgslmultiset.a/file.o .libs/libgsl.lax/lt39-file.o libtool: link: ln .libs/libgsl.lax/libgslmultiset.a/init.o .libs/libgsl.lax/lt40-init.o || cp .libs/libgsl.lax/libgslmultiset.a/init.o .libs/libgsl.lax/lt40-init.o libtool: link: ln .libs/libgsl.lax/libgslmultiset.a/inline.o .libs/libgsl.lax/lt41-inline.o || cp .libs/libgsl.lax/libgslmultiset.a/inline.o .libs/libgsl.lax/lt41-inline.o libtool: link: ln .libs/libgsl.lax/libgslpoly.a/deriv.o .libs/libgsl.lax/lt42-deriv.o || cp .libs/libgsl.lax/libgslpoly.a/deriv.o .libs/libgsl.lax/lt42-deriv.o libtool: link: ln .libs/libgsl.lax/libgslpoly.a/eval.o .libs/libgsl.lax/lt43-eval.o || cp .libs/libgsl.lax/libgslpoly.a/eval.o .libs/libgsl.lax/lt43-eval.o libtool: link: ln .libs/libgsl.lax/libgslqrng.a/inline.o .libs/libgsl.lax/lt44-inline.o || cp .libs/libgsl.lax/libgslqrng.a/inline.o .libs/libgsl.lax/lt44-inline.o libtool: link: ln .libs/libgsl.lax/libgslrandist.a/exponential.o .libs/libgsl.lax/lt45-exponential.o || cp .libs/libgsl.lax/libgslrandist.a/exponential.o .libs/libgsl.lax/lt45-exponential.o libtool: link: ln .libs/libgsl.lax/libgslrng.a/file.o .libs/libgsl.lax/lt46-file.o || cp .libs/libgsl.lax/libgslrng.a/file.o .libs/libgsl.lax/lt46-file.o libtool: link: ln .libs/libgsl.lax/libgslrng.a/inline.o .libs/libgsl.lax/lt47-inline.o || cp .libs/libgsl.lax/libgslrng.a/inline.o .libs/libgsl.lax/lt47-inline.o libtool: link: ln .libs/libgsl.lax/libgslroots.a/brent.o .libs/libgsl.lax/lt48-brent.o || cp .libs/libgsl.lax/libgslroots.a/brent.o .libs/libgsl.lax/lt48-brent.o libtool: link: ln .libs/libgsl.lax/libgslroots.a/convergence.o .libs/libgsl.lax/lt49-convergence.o || cp .libs/libgsl.lax/libgslroots.a/convergence.o .libs/libgsl.lax/lt49-convergence.o libtool: link: ln .libs/libgsl.lax/libgslroots.a/fdfsolver.o .libs/libgsl.lax/lt50-fdfsolver.o || cp .libs/libgsl.lax/libgslroots.a/fdfsolver.o .libs/libgsl.lax/lt50-fdfsolver.o libtool: link: ln .libs/libgsl.lax/libgslroots.a/fsolver.o .libs/libgsl.lax/lt51-fsolver.o || cp .libs/libgsl.lax/libgslroots.a/fsolver.o .libs/libgsl.lax/lt51-fsolver.o libtool: link: ln .libs/libgsl.lax/libgslroots.a/newton.o .libs/libgsl.lax/lt52-newton.o || cp .libs/libgsl.lax/libgslroots.a/newton.o .libs/libgsl.lax/lt52-newton.o libtool: link: ln .libs/libgsl.lax/libgslsort.a/sort.o .libs/libgsl.lax/lt53-sort.o || cp .libs/libgsl.lax/libgslsort.a/sort.o .libs/libgsl.lax/lt53-sort.o libtool: link: ln .libs/libgsl.lax/libgslspecfunc.a/beta.o .libs/libgsl.lax/lt54-beta.o || cp .libs/libgsl.lax/libgslspecfunc.a/beta.o .libs/libgsl.lax/lt54-beta.o libtool: link: ln .libs/libgsl.lax/libgslspecfunc.a/gamma.o .libs/libgsl.lax/lt55-gamma.o || cp .libs/libgsl.lax/libgslspecfunc.a/gamma.o .libs/libgsl.lax/lt55-gamma.o libtool: link: ln .libs/libgsl.lax/libgslspecfunc.a/hyperg.o .libs/libgsl.lax/lt56-hyperg.o || cp .libs/libgsl.lax/libgslspecfunc.a/hyperg.o .libs/libgsl.lax/lt56-hyperg.o libtool: link: ln .libs/libgsl.lax/libgslstatistics.a/minmax.o .libs/libgsl.lax/lt57-minmax.o || cp .libs/libgsl.lax/libgslstatistics.a/minmax.o .libs/libgsl.lax/lt57-minmax.o libtool: link: ln .libs/libgsl.lax/libgslsys.a/minmax.o .libs/libgsl.lax/lt58-minmax.o || cp .libs/libgsl.lax/libgslsys.a/minmax.o .libs/libgsl.lax/lt58-minmax.o libtool: link: ln .libs/libgsl.lax/libgslsys.a/pow_int.o .libs/libgsl.lax/lt59-pow_int.o || cp .libs/libgsl.lax/libgslsys.a/pow_int.o .libs/libgsl.lax/lt59-pow_int.o libtool: link: ln .libs/libgsl.lax/libgslvector.a/copy.o .libs/libgsl.lax/lt60-copy.o || cp .libs/libgsl.lax/libgslvector.a/copy.o .libs/libgsl.lax/lt60-copy.o libtool: link: ln .libs/libgsl.lax/libgslvector.a/file.o .libs/libgsl.lax/lt61-file.o || cp .libs/libgsl.lax/libgslvector.a/file.o .libs/libgsl.lax/lt61-file.o libtool: link: ln .libs/libgsl.lax/libgslvector.a/init.o .libs/libgsl.lax/lt62-init.o || cp .libs/libgsl.lax/libgslvector.a/init.o .libs/libgsl.lax/lt62-init.o libtool: link: ln .libs/libgsl.lax/libgslvector.a/minmax.o .libs/libgsl.lax/lt63-minmax.o || cp .libs/libgsl.lax/libgslvector.a/minmax.o .libs/libgsl.lax/lt63-minmax.o libtool: link: ln .libs/libgsl.lax/libgslvector.a/oper.o .libs/libgsl.lax/lt64-oper.o || cp .libs/libgsl.lax/libgslvector.a/oper.o .libs/libgsl.lax/lt64-oper.o libtool: link: ln .libs/libgsl.lax/libgslvector.a/prop.o .libs/libgsl.lax/lt65-prop.o || cp .libs/libgsl.lax/libgslvector.a/prop.o .libs/libgsl.lax/lt65-prop.o libtool: link: ln .libs/libgsl.lax/libgslvector.a/swap.o .libs/libgsl.lax/lt66-swap.o || cp .libs/libgsl.lax/libgslvector.a/swap.o .libs/libgsl.lax/lt66-swap.o libtool: link: ln .libs/libgsl.lax/libgslvector.a/view.o .libs/libgsl.lax/lt67-view.o || cp .libs/libgsl.lax/libgslvector.a/view.o .libs/libgsl.lax/lt67-view.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/beta.o .libs/libgsl.lax/lt68-beta.o || cp .libs/libgsl.lax/libgslcdf.a/beta.o .libs/libgsl.lax/lt68-beta.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/binomial.o .libs/libgsl.lax/lt69-binomial.o || cp .libs/libgsl.lax/libgslcdf.a/binomial.o .libs/libgsl.lax/lt69-binomial.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/cauchy.o .libs/libgsl.lax/lt70-cauchy.o || cp .libs/libgsl.lax/libgslcdf.a/cauchy.o .libs/libgsl.lax/lt70-cauchy.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/chisq.o .libs/libgsl.lax/lt71-chisq.o || cp .libs/libgsl.lax/libgslcdf.a/chisq.o .libs/libgsl.lax/lt71-chisq.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/exponential.o .libs/libgsl.lax/lt72-exponential.o || cp .libs/libgsl.lax/libgslcdf.a/exponential.o .libs/libgsl.lax/lt72-exponential.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/exppow.o .libs/libgsl.lax/lt73-exppow.o || cp .libs/libgsl.lax/libgslcdf.a/exppow.o .libs/libgsl.lax/lt73-exppow.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/fdist.o .libs/libgsl.lax/lt74-fdist.o || cp .libs/libgsl.lax/libgslcdf.a/fdist.o .libs/libgsl.lax/lt74-fdist.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/flat.o .libs/libgsl.lax/lt75-flat.o || cp .libs/libgsl.lax/libgslcdf.a/flat.o .libs/libgsl.lax/lt75-flat.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/gamma.o .libs/libgsl.lax/lt76-gamma.o || cp .libs/libgsl.lax/libgslcdf.a/gamma.o .libs/libgsl.lax/lt76-gamma.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/gauss.o .libs/libgsl.lax/lt77-gauss.o || cp .libs/libgsl.lax/libgslcdf.a/gauss.o .libs/libgsl.lax/lt77-gauss.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/geometric.o .libs/libgsl.lax/lt78-geometric.o || cp .libs/libgsl.lax/libgslcdf.a/geometric.o .libs/libgsl.lax/lt78-geometric.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/laplace.o .libs/libgsl.lax/lt79-laplace.o || cp .libs/libgsl.lax/libgslcdf.a/laplace.o .libs/libgsl.lax/lt79-laplace.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/logistic.o .libs/libgsl.lax/lt80-logistic.o || cp .libs/libgsl.lax/libgslcdf.a/logistic.o .libs/libgsl.lax/lt80-logistic.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/lognormal.o .libs/libgsl.lax/lt81-lognormal.o || cp .libs/libgsl.lax/libgslcdf.a/lognormal.o .libs/libgsl.lax/lt81-lognormal.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/nbinomial.o .libs/libgsl.lax/lt82-nbinomial.o || cp .libs/libgsl.lax/libgslcdf.a/nbinomial.o .libs/libgsl.lax/lt82-nbinomial.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/pareto.o .libs/libgsl.lax/lt83-pareto.o || cp .libs/libgsl.lax/libgslcdf.a/pareto.o .libs/libgsl.lax/lt83-pareto.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/pascal.o .libs/libgsl.lax/lt84-pascal.o || cp .libs/libgsl.lax/libgslcdf.a/pascal.o .libs/libgsl.lax/lt84-pascal.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/poisson.o .libs/libgsl.lax/lt85-poisson.o || cp .libs/libgsl.lax/libgslcdf.a/poisson.o .libs/libgsl.lax/lt85-poisson.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/rayleigh.o .libs/libgsl.lax/lt86-rayleigh.o || cp .libs/libgsl.lax/libgslcdf.a/rayleigh.o .libs/libgsl.lax/lt86-rayleigh.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/tdist.o .libs/libgsl.lax/lt87-tdist.o || cp .libs/libgsl.lax/libgslcdf.a/tdist.o .libs/libgsl.lax/lt87-tdist.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/weibull.o .libs/libgsl.lax/lt88-weibull.o || cp .libs/libgsl.lax/libgslcdf.a/weibull.o .libs/libgsl.lax/lt88-weibull.o libtool: link: ln .libs/libgsl.lax/libgslwavelet.a/bspline.o .libs/libgsl.lax/lt89-bspline.o || cp .libs/libgsl.lax/libgslwavelet.a/bspline.o .libs/libgsl.lax/lt89-bspline.o libtool: link: ar cru .libs/libgsl.a version.o .libs/libgsl.lax/libgslblock.a/block.o .libs/libgsl.lax/libgslblock.a/file.o .libs/libgsl.lax/libgslblock.a/init.o .libs/libgsl.lax/libgslblas.a/blas.o .libs/libgsl.lax/libgslbspline.a/bspline.o .libs/libgsl.lax/libgslbspline.a/greville.o .libs/libgsl.lax/libgslcomplex.a/inline.o .libs/libgsl.lax/libgslcomplex.a/math.o .libs/libgsl.lax/libgslcheb.a/deriv.o .libs/libgsl.lax/libgslcheb.a/eval.o .libs/libgsl.lax/lt1-init.o .libs/libgsl.lax/libgslcheb.a/integ.o .libs/libgsl.lax/libgsldht.a/dht.o .libs/libgsl.lax/libgsldiff.a/diff.o .libs/libgsl.lax/lt2-deriv.o .libs/libgsl.lax/libgsleigen.a/francis.o .libs/libgsl.lax/libgsleigen.a/gen.o 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.libs/libgsl.lax/libgslieeeutils.a/make_rep.o .libs/libgsl.lax/libgslieeeutils.a/print.o .libs/libgsl.lax/libgslieeeutils.a/read.o .libs/libgsl.lax/libgslintegration.a/cquad.o .libs/libgsl.lax/libgslintegration.a/glfixed.o .libs/libgsl.lax/libgslintegration.a/qag.o .libs/libgsl.lax/libgslintegration.a/qagp.o .libs/libgsl.lax/libgslintegration.a/qags.o .libs/libgsl.lax/libgslintegration.a/qawc.o .libs/libgsl.lax/libgslintegration.a/qawf.o .libs/libgsl.lax/libgslintegration.a/qawo.o .libs/libgsl.lax/libgslintegration.a/qaws.o .libs/libgsl.lax/libgslintegration.a/qcheb.o .libs/libgsl.lax/libgslintegration.a/qk.o .libs/libgsl.lax/libgslintegration.a/qk15.o .libs/libgsl.lax/libgslintegration.a/qk21.o .libs/libgsl.lax/libgslintegration.a/qk31.o .libs/libgsl.lax/libgslintegration.a/qk41.o .libs/libgsl.lax/libgslintegration.a/qk51.o .libs/libgsl.lax/libgslintegration.a/qk61.o .libs/libgsl.lax/libgslintegration.a/qmomo.o .libs/libgsl.lax/libgslintegration.a/qmomof.o .libs/libgsl.lax/libgslintegration.a/qng.o .libs/libgsl.lax/libgslintegration.a/workspace.o .libs/libgsl.lax/libgslinterpolation.a/accel.o .libs/libgsl.lax/libgslinterpolation.a/akima.o .libs/libgsl.lax/libgslinterpolation.a/bicubic.o .libs/libgsl.lax/libgslinterpolation.a/bilinear.o .libs/libgsl.lax/libgslinterpolation.a/cspline.o .libs/libgsl.lax/lt5-inline.o .libs/libgsl.lax/libgslinterpolation.a/interp.o .libs/libgsl.lax/libgslinterpolation.a/interp2d.o .libs/libgsl.lax/lt6-linear.o .libs/libgsl.lax/libgslinterpolation.a/poly.o .libs/libgsl.lax/libgslinterpolation.a/spline.o .libs/libgsl.lax/libgslinterpolation.a/spline2d.o .libs/libgsl.lax/libgslinterpolation.a/steffen.o .libs/libgsl.lax/libgsllinalg.a/balance.o .libs/libgsl.lax/libgsllinalg.a/balancemat.o .libs/libgsl.lax/libgsllinalg.a/bidiag.o .libs/libgsl.lax/libgsllinalg.a/cholesky.o .libs/libgsl.lax/libgsllinalg.a/choleskyc.o .libs/libgsl.lax/libgsllinalg.a/exponential.o .libs/libgsl.lax/libgsllinalg.a/hermtd.o 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.libs/libgsl.lax/libgslmatrix.a/submatrix.o .libs/libgsl.lax/libgslmatrix.a/swap.o .libs/libgsl.lax/libgslmatrix.a/view.o .libs/libgsl.lax/libgslmin.a/bracketing.o .libs/libgsl.lax/libgslmin.a/brent.o .libs/libgsl.lax/libgslmin.a/convergence.o .libs/libgsl.lax/libgslmin.a/fsolver.o .libs/libgsl.lax/libgslmin.a/golden.o .libs/libgsl.lax/libgslmin.a/quad_golden.o .libs/libgsl.lax/libgslmonte.a/miser.o .libs/libgsl.lax/libgslmonte.a/plain.o .libs/libgsl.lax/libgslmonte.a/vegas.o .libs/libgsl.lax/lt12-convergence.o .libs/libgsl.lax/libgslmultifit.a/covar.o .libs/libgsl.lax/libgslmultifit.a/fdfridge.o .libs/libgsl.lax/libgslmultifit.a/fdfsolver.o .libs/libgsl.lax/libgslmultifit.a/fdjac.o .libs/libgsl.lax/lt13-fsolver.o .libs/libgsl.lax/libgslmultifit.a/gradient.o .libs/libgsl.lax/libgslmultifit.a/lmder.o .libs/libgsl.lax/libgslmultifit.a/lmniel.o .libs/libgsl.lax/libgslmultifit.a/multilinear.o .libs/libgsl.lax/libgslmultifit.a/multireg.o .libs/libgsl.lax/libgslmultifit.a/multirobust.o 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.libs/libgsl.lax/lt42-deriv.o .libs/libgsl.lax/lt43-eval.o .libs/libgsl.lax/libgslpoly.a/solve_cubic.o .libs/libgsl.lax/libgslpoly.a/solve_quadratic.o .libs/libgsl.lax/libgslpoly.a/zsolve.o .libs/libgsl.lax/libgslpoly.a/zsolve_cubic.o .libs/libgsl.lax/libgslpoly.a/zsolve_init.o .libs/libgsl.lax/libgslpoly.a/zsolve_quadratic.o .libs/libgsl.lax/libgslqrng.a/halton.o .libs/libgsl.lax/lt44-inline.o .libs/libgsl.lax/libgslqrng.a/niederreiter-2.o .libs/libgsl.lax/libgslqrng.a/qrng.o .libs/libgsl.lax/libgslqrng.a/reversehalton.o .libs/libgsl.lax/libgslqrng.a/sobol.o .libs/libgsl.lax/libgslrandist.a/bernoulli.o .libs/libgsl.lax/libgslrandist.a/beta.o .libs/libgsl.lax/libgslrandist.a/bigauss.o .libs/libgsl.lax/libgslrandist.a/binomial.o .libs/libgsl.lax/libgslrandist.a/binomial_tpe.o .libs/libgsl.lax/libgslrandist.a/cauchy.o .libs/libgsl.lax/libgslrandist.a/chisq.o .libs/libgsl.lax/libgslrandist.a/dirichlet.o .libs/libgsl.lax/libgslrandist.a/discrete.o .libs/libgsl.lax/libgslrandist.a/erlang.o .libs/libgsl.lax/lt45-exponential.o .libs/libgsl.lax/libgslrandist.a/exppow.o .libs/libgsl.lax/libgslrandist.a/fdist.o .libs/libgsl.lax/libgslrandist.a/flat.o .libs/libgsl.lax/libgslrandist.a/gamma.o .libs/libgsl.lax/libgslrandist.a/gauss.o .libs/libgsl.lax/libgslrandist.a/gausstail.o .libs/libgsl.lax/libgslrandist.a/gausszig.o .libs/libgsl.lax/libgslrandist.a/geometric.o .libs/libgsl.lax/libgslrandist.a/gumbel.o .libs/libgsl.lax/libgslrandist.a/hyperg.o .libs/libgsl.lax/libgslrandist.a/landau.o .libs/libgsl.lax/libgslrandist.a/laplace.o .libs/libgsl.lax/libgslrandist.a/levy.o .libs/libgsl.lax/libgslrandist.a/logarithmic.o .libs/libgsl.lax/libgslrandist.a/logistic.o .libs/libgsl.lax/libgslrandist.a/lognormal.o .libs/libgsl.lax/libgslrandist.a/multinomial.o .libs/libgsl.lax/libgslrandist.a/nbinomial.o .libs/libgsl.lax/libgslrandist.a/pareto.o .libs/libgsl.lax/libgslrandist.a/pascal.o .libs/libgsl.lax/libgslrandist.a/poisson.o .libs/libgsl.lax/libgslrandist.a/rayleigh.o .libs/libgsl.lax/libgslrandist.a/shuffle.o .libs/libgsl.lax/libgslrandist.a/sphere.o .libs/libgsl.lax/libgslrandist.a/tdist.o .libs/libgsl.lax/libgslrandist.a/weibull.o .libs/libgsl.lax/libgslrng.a/borosh13.o .libs/libgsl.lax/libgslrng.a/cmrg.o .libs/libgsl.lax/libgslrng.a/coveyou.o .libs/libgsl.lax/libgslrng.a/default.o .libs/libgsl.lax/lt46-file.o .libs/libgsl.lax/libgslrng.a/fishman18.o .libs/libgsl.lax/libgslrng.a/fishman20.o .libs/libgsl.lax/libgslrng.a/fishman2x.o .libs/libgsl.lax/libgslrng.a/gfsr4.o .libs/libgsl.lax/lt47-inline.o .libs/libgsl.lax/libgslrng.a/knuthran.o .libs/libgsl.lax/libgslrng.a/knuthran2.o .libs/libgsl.lax/libgslrng.a/knuthran2002.o .libs/libgsl.lax/libgslrng.a/lecuyer21.o .libs/libgsl.lax/libgslrng.a/minstd.o .libs/libgsl.lax/libgslrng.a/mrg.o .libs/libgsl.lax/libgslrng.a/mt.o .libs/libgsl.lax/libgslrng.a/r250.o .libs/libgsl.lax/libgslrng.a/ran0.o .libs/libgsl.lax/libgslrng.a/ran1.o .libs/libgsl.lax/libgslrng.a/ran2.o .libs/libgsl.lax/libgslrng.a/ran3.o .libs/libgsl.lax/libgslrng.a/rand.o .libs/libgsl.lax/libgslrng.a/rand48.o .libs/libgsl.lax/libgslrng.a/random.o .libs/libgsl.lax/libgslrng.a/randu.o .libs/libgsl.lax/libgslrng.a/ranf.o .libs/libgsl.lax/libgslrng.a/ranlux.o .libs/libgsl.lax/libgslrng.a/ranlxd.o .libs/libgsl.lax/libgslrng.a/ranlxs.o .libs/libgsl.lax/libgslrng.a/ranmar.o .libs/libgsl.lax/libgslrng.a/rng.o .libs/libgsl.lax/libgslrng.a/slatec.o .libs/libgsl.lax/libgslrng.a/taus.o .libs/libgsl.lax/libgslrng.a/taus113.o .libs/libgsl.lax/libgslrng.a/transputer.o .libs/libgsl.lax/libgslrng.a/tt.o .libs/libgsl.lax/libgslrng.a/types.o .libs/libgsl.lax/libgslrng.a/uni.o .libs/libgsl.lax/libgslrng.a/uni32.o .libs/libgsl.lax/libgslrng.a/vax.o .libs/libgsl.lax/libgslrng.a/waterman14.o .libs/libgsl.lax/libgslrng.a/zuf.o .libs/libgsl.lax/libgslroots.a/bisection.o .libs/libgsl.lax/lt48-brent.o .libs/libgsl.lax/lt49-convergence.o .libs/libgsl.lax/libgslroots.a/falsepos.o .libs/libgsl.lax/lt50-fdfsolver.o .libs/libgsl.lax/lt51-fsolver.o .libs/libgsl.lax/lt52-newton.o .libs/libgsl.lax/libgslroots.a/secant.o .libs/libgsl.lax/libgslroots.a/steffenson.o .libs/libgsl.lax/libgslsiman.a/siman.o .libs/libgsl.lax/lt53-sort.o .libs/libgsl.lax/libgslsort.a/sortind.o .libs/libgsl.lax/libgslsort.a/sortvec.o .libs/libgsl.lax/libgslsort.a/sortvecind.o .libs/libgsl.lax/libgslsort.a/subset.o .libs/libgsl.lax/libgslsort.a/subsetind.o .libs/libgsl.lax/libgslspecfunc.a/airy.o .libs/libgsl.lax/libgslspecfunc.a/airy_der.o .libs/libgsl.lax/libgslspecfunc.a/airy_zero.o .libs/libgsl.lax/libgslspecfunc.a/atanint.o .libs/libgsl.lax/libgslspecfunc.a/bessel.o .libs/libgsl.lax/libgslspecfunc.a/bessel_I0.o .libs/libgsl.lax/libgslspecfunc.a/bessel_I1.o .libs/libgsl.lax/libgslspecfunc.a/bessel_In.o .libs/libgsl.lax/libgslspecfunc.a/bessel_Inu.o .libs/libgsl.lax/libgslspecfunc.a/bessel_J0.o .libs/libgsl.lax/libgslspecfunc.a/bessel_J1.o .libs/libgsl.lax/libgslspecfunc.a/bessel_Jn.o .libs/libgsl.lax/libgslspecfunc.a/bessel_Jnu.o .libs/libgsl.lax/libgslspecfunc.a/bessel_K0.o .libs/libgsl.lax/libgslspecfunc.a/bessel_K1.o .libs/libgsl.lax/libgslspecfunc.a/bessel_Kn.o .libs/libgsl.lax/libgslspecfunc.a/bessel_Knu.o .libs/libgsl.lax/libgslspecfunc.a/bessel_Y0.o .libs/libgsl.lax/libgslspecfunc.a/bessel_Y1.o .libs/libgsl.lax/libgslspecfunc.a/bessel_Yn.o .libs/libgsl.lax/libgslspecfunc.a/bessel_Ynu.o .libs/libgsl.lax/libgslspecfunc.a/bessel_amp_phase.o .libs/libgsl.lax/libgslspecfunc.a/bessel_i.o .libs/libgsl.lax/libgslspecfunc.a/bessel_j.o .libs/libgsl.lax/libgslspecfunc.a/bessel_k.o .libs/libgsl.lax/libgslspecfunc.a/bessel_olver.o .libs/libgsl.lax/libgslspecfunc.a/bessel_sequence.o .libs/libgsl.lax/libgslspecfunc.a/bessel_temme.o .libs/libgsl.lax/libgslspecfunc.a/bessel_y.o .libs/libgsl.lax/libgslspecfunc.a/bessel_zero.o .libs/libgsl.lax/lt54-beta.o .libs/libgsl.lax/libgslspecfunc.a/beta_inc.o .libs/libgsl.lax/libgslspecfunc.a/clausen.o .libs/libgsl.lax/libgslspecfunc.a/coulomb.o .libs/libgsl.lax/libgslspecfunc.a/coulomb_bound.o .libs/libgsl.lax/libgslspecfunc.a/coupling.o .libs/libgsl.lax/libgslspecfunc.a/dawson.o .libs/libgsl.lax/libgslspecfunc.a/debye.o .libs/libgsl.lax/libgslspecfunc.a/dilog.o .libs/libgsl.lax/libgslspecfunc.a/elementary.o .libs/libgsl.lax/libgslspecfunc.a/ellint.o .libs/libgsl.lax/libgslspecfunc.a/elljac.o .libs/libgsl.lax/libgslspecfunc.a/erfc.o .libs/libgsl.lax/libgslspecfunc.a/exp.o .libs/libgsl.lax/libgslspecfunc.a/expint.o .libs/libgsl.lax/libgslspecfunc.a/expint3.o .libs/libgsl.lax/libgslspecfunc.a/fermi_dirac.o .libs/libgsl.lax/lt55-gamma.o .libs/libgsl.lax/libgslspecfunc.a/gamma_inc.o .libs/libgsl.lax/libgslspecfunc.a/gegenbauer.o .libs/libgsl.lax/lt56-hyperg.o .libs/libgsl.lax/libgslspecfunc.a/hyperg_0F1.o .libs/libgsl.lax/libgslspecfunc.a/hyperg_1F1.o .libs/libgsl.lax/libgslspecfunc.a/hyperg_2F0.o .libs/libgsl.lax/libgslspecfunc.a/hyperg_2F1.o .libs/libgsl.lax/libgslspecfunc.a/hyperg_U.o .libs/libgsl.lax/libgslspecfunc.a/laguerre.o .libs/libgsl.lax/libgslspecfunc.a/lambert.o .libs/libgsl.lax/libgslspecfunc.a/legendre_H3d.o .libs/libgsl.lax/libgslspecfunc.a/legendre_P.o .libs/libgsl.lax/libgslspecfunc.a/legendre_Qn.o .libs/libgsl.lax/libgslspecfunc.a/legendre_con.o .libs/libgsl.lax/libgslspecfunc.a/legendre_poly.o .libs/libgsl.lax/libgslspecfunc.a/log.o .libs/libgsl.lax/libgslspecfunc.a/mathieu_angfunc.o .libs/libgsl.lax/libgslspecfunc.a/mathieu_charv.o .libs/libgsl.lax/libgslspecfunc.a/mathieu_coeff.o .libs/libgsl.lax/libgslspecfunc.a/mathieu_radfunc.o .libs/libgsl.lax/libgslspecfunc.a/mathieu_workspace.o .libs/libgsl.lax/libgslspecfunc.a/poch.o .libs/libgsl.lax/libgslspecfunc.a/pow_int.o .libs/libgsl.lax/libgslspecfunc.a/psi.o .libs/libgsl.lax/libgslspecfunc.a/result.o .libs/libgsl.lax/libgslspecfunc.a/shint.o .libs/libgsl.lax/libgslspecfunc.a/sinint.o .libs/libgsl.lax/libgslspecfunc.a/synchrotron.o .libs/libgsl.lax/libgslspecfunc.a/transport.o .libs/libgsl.lax/libgslspecfunc.a/trig.o .libs/libgsl.lax/libgslspecfunc.a/zeta.o .libs/libgsl.lax/libgslrstat.a/rquantile.o .libs/libgsl.lax/libgslrstat.a/rstat.o .libs/libgsl.lax/libgslstatistics.a/absdev.o .libs/libgsl.lax/libgslstatistics.a/covariance.o .libs/libgsl.lax/libgslstatistics.a/kurtosis.o .libs/libgsl.lax/libgslstatistics.a/lag1.o .libs/libgsl.lax/libgslstatistics.a/mean.o .libs/libgsl.lax/libgslstatistics.a/median.o .libs/libgsl.lax/lt57-minmax.o .libs/libgsl.lax/libgslstatistics.a/p_variance.o .libs/libgsl.lax/libgslstatistics.a/quantiles.o .libs/libgsl.lax/libgslstatistics.a/skew.o .libs/libgsl.lax/libgslstatistics.a/ttest.o .libs/libgsl.lax/libgslstatistics.a/variance.o .libs/libgsl.lax/libgslstatistics.a/wabsdev.o .libs/libgsl.lax/libgslstatistics.a/wkurtosis.o .libs/libgsl.lax/libgslstatistics.a/wmean.o .libs/libgsl.lax/libgslstatistics.a/wskew.o .libs/libgsl.lax/libgslstatistics.a/wvariance.o .libs/libgsl.lax/libgslsum.a/levin_u.o .libs/libgsl.lax/libgslsum.a/levin_utrunc.o .libs/libgsl.lax/libgslsum.a/work_u.o .libs/libgsl.lax/libgslsum.a/work_utrunc.o .libs/libgsl.lax/libgslsys.a/coerce.o .libs/libgsl.lax/libgslsys.a/expm1.o .libs/libgsl.lax/libgslsys.a/fcmp.o .libs/libgsl.lax/libgslsys.a/fdiv.o .libs/libgsl.lax/libgslsys.a/hypot.o .libs/libgsl.lax/libgslsys.a/infnan.o .libs/libgsl.lax/libgslsys.a/invhyp.o .libs/libgsl.lax/libgslsys.a/ldfrexp.o .libs/libgsl.lax/libgslsys.a/log1p.o .libs/libgsl.lax/lt58-minmax.o .libs/libgsl.lax/lt59-pow_int.o .libs/libgsl.lax/libgslsys.a/prec.o .libs/libgsl.lax/libgsltest.a/results.o .libs/libgsl.lax/libutils.a/placeholder.o .libs/libgsl.lax/lt60-copy.o .libs/libgsl.lax/lt61-file.o .libs/libgsl.lax/lt62-init.o .libs/libgsl.lax/lt63-minmax.o .libs/libgsl.lax/lt64-oper.o .libs/libgsl.lax/lt65-prop.o .libs/libgsl.lax/libgslvector.a/reim.o .libs/libgsl.lax/libgslvector.a/subvector.o .libs/libgsl.lax/lt66-swap.o .libs/libgsl.lax/libgslvector.a/vector.o .libs/libgsl.lax/lt67-view.o .libs/libgsl.lax/lt68-beta.o .libs/libgsl.lax/libgslcdf.a/betainv.o .libs/libgsl.lax/lt69-binomial.o .libs/libgsl.lax/lt70-cauchy.o .libs/libgsl.lax/libgslcdf.a/cauchyinv.o .libs/libgsl.lax/lt71-chisq.o .libs/libgsl.lax/libgslcdf.a/chisqinv.o .libs/libgsl.lax/lt72-exponential.o .libs/libgsl.lax/libgslcdf.a/exponentialinv.o .libs/libgsl.lax/lt73-exppow.o .libs/libgsl.lax/lt74-fdist.o .libs/libgsl.lax/libgslcdf.a/fdistinv.o .libs/libgsl.lax/lt75-flat.o .libs/libgsl.lax/libgslcdf.a/flatinv.o .libs/libgsl.lax/lt76-gamma.o .libs/libgsl.lax/libgslcdf.a/gammainv.o .libs/libgsl.lax/lt77-gauss.o .libs/libgsl.lax/libgslcdf.a/gaussinv.o .libs/libgsl.lax/lt78-geometric.o .libs/libgsl.lax/libgslcdf.a/gumbel1.o .libs/libgsl.lax/libgslcdf.a/gumbel1inv.o .libs/libgsl.lax/libgslcdf.a/gumbel2.o .libs/libgsl.lax/libgslcdf.a/gumbel2inv.o .libs/libgsl.lax/libgslcdf.a/hypergeometric.o .libs/libgsl.lax/lt79-laplace.o .libs/libgsl.lax/libgslcdf.a/laplaceinv.o .libs/libgsl.lax/lt80-logistic.o .libs/libgsl.lax/libgslcdf.a/logisticinv.o .libs/libgsl.lax/lt81-lognormal.o .libs/libgsl.lax/libgslcdf.a/lognormalinv.o .libs/libgsl.lax/lt82-nbinomial.o .libs/libgsl.lax/lt83-pareto.o .libs/libgsl.lax/libgslcdf.a/paretoinv.o .libs/libgsl.lax/lt84-pascal.o .libs/libgsl.lax/lt85-poisson.o .libs/libgsl.lax/lt86-rayleigh.o .libs/libgsl.lax/libgslcdf.a/rayleighinv.o .libs/libgsl.lax/lt87-tdist.o .libs/libgsl.lax/libgslcdf.a/tdistinv.o .libs/libgsl.lax/lt88-weibull.o .libs/libgsl.lax/libgslcdf.a/weibullinv.o .libs/libgsl.lax/lt89-bspline.o .libs/libgsl.lax/libgslwavelet.a/daubechies.o .libs/libgsl.lax/libgslwavelet.a/dwt.o .libs/libgsl.lax/libgslwavelet.a/haar.o .libs/libgsl.lax/libgslwavelet.a/wavelet.o .libs/libgsl.lax/libgslspmatrix.a/spcompress.o .libs/libgsl.lax/libgslspmatrix.a/spcopy.o .libs/libgsl.lax/libgslspmatrix.a/spgetset.o .libs/libgsl.lax/libgslspmatrix.a/spmatrix.o .libs/libgsl.lax/libgslspmatrix.a/spoper.o .libs/libgsl.lax/libgslspmatrix.a/spprop.o .libs/libgsl.lax/libgslspmatrix.a/spswap.o .libs/libgsl.lax/libgslspblas.a/spdgemm.o .libs/libgsl.lax/libgslspblas.a/spdgemv.o .libs/libgsl.lax/libgslsplinalg.a/gmres.o .libs/libgsl.lax/libgslsplinalg.a/itersolve.o libtool: link: ranlib .libs/libgsl.a libtool: link: rm -fr .libs/libgsl.lax .libs/libgsl.lax libtool: link: ( cd ".libs" && rm -f "libgsl.la" && ln -s "../libgsl.la" "libgsl.la" ) gcc -DHAVE_CONFIG_H -I. -g -O2 -MT gsl-randist.o -MD -MP -MF .deps/gsl-randist.Tpo -c -o gsl-randist.o gsl-randist.c mv -f .deps/gsl-randist.Tpo .deps/gsl-randist.Po /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -o gsl-randist gsl-randist.o libgsl.la cblas/libgslcblas.la -lm libtool: link: gcc -g -O2 -o .libs/gsl-randist gsl-randist.o ./.libs/libgsl.dylib cblas/.libs/libgslcblas.dylib -lm gcc -DHAVE_CONFIG_H -I. -g -O2 -MT gsl-histogram.o -MD -MP -MF .deps/gsl-histogram.Tpo -c -o gsl-histogram.o gsl-histogram.c mv -f .deps/gsl-histogram.Tpo .deps/gsl-histogram.Po /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -o gsl-histogram gsl-histogram.o libgsl.la cblas/libgslcblas.la -lm libtool: link: gcc -g -O2 -o .libs/gsl-histogram gsl-histogram.o ./.libs/libgsl.dylib cblas/.libs/libgslcblas.dylib -lm creating gsl-config creating gsl.pc
%%bash
time make install
Making install in gsl
make[2]: Nothing to be done for `install-exec-am'.
make[2]: Nothing to be done for `install-data-am'.
Making install in utils
make[2]: Nothing to be done for `install-exec-am'.
make[2]: Nothing to be done for `install-data-am'.
Making install in sys
make[2]: Nothing to be done for `install-exec-am'.
.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_sys.h '/usr/local/include/gsl'
Making install in test
make[2]: Nothing to be done for `install-exec-am'.
.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_test.h '/usr/local/include/gsl'
Making install in err
make[2]: Nothing to be done for `install-exec-am'.
.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_errno.h gsl_message.h '/usr/local/include/gsl'
Making install in const
make[2]: Nothing to be done for `install-exec-am'.
.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_const.h gsl_const_cgs.h gsl_const_mks.h gsl_const_cgsm.h gsl_const_mksa.h gsl_const_num.h '/usr/local/include/gsl'
Making install in complex
make[2]: Nothing to be done for `install-exec-am'.
.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_complex.h gsl_complex_math.h '/usr/local/include/gsl'
Making install in cheb
make[2]: Nothing to be done for `install-exec-am'.
.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_chebyshev.h '/usr/local/include/gsl'
Making install in block
make[2]: Nothing to be done for `install-exec-am'.
.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_block.h gsl_block_char.h gsl_block_complex_double.h gsl_block_complex_float.h gsl_block_complex_long_double.h gsl_block_double.h gsl_block_float.h gsl_block_int.h gsl_block_long.h gsl_block_long_double.h gsl_block_short.h gsl_block_uchar.h gsl_block_uint.h gsl_block_ulong.h gsl_block_ushort.h gsl_check_range.h '/usr/local/include/gsl'
Making install in vector
make[2]: Nothing to be done for `install-exec-am'.
.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_vector.h gsl_vector_char.h gsl_vector_complex.h gsl_vector_complex_double.h gsl_vector_complex_float.h gsl_vector_complex_long_double.h gsl_vector_double.h gsl_vector_float.h gsl_vector_int.h gsl_vector_long.h gsl_vector_long_double.h gsl_vector_short.h gsl_vector_uchar.h gsl_vector_uint.h gsl_vector_ulong.h gsl_vector_ushort.h '/usr/local/include/gsl'
Making install in matrix
make[2]: Nothing to be done for `install-exec-am'.
.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_matrix.h gsl_matrix_char.h gsl_matrix_complex_double.h gsl_matrix_complex_float.h gsl_matrix_complex_long_double.h gsl_matrix_double.h gsl_matrix_float.h gsl_matrix_int.h gsl_matrix_long.h gsl_matrix_long_double.h gsl_matrix_short.h gsl_matrix_uchar.h gsl_matrix_uint.h gsl_matrix_ulong.h gsl_matrix_ushort.h '/usr/local/include/gsl'
Making install in permutation
make[2]: Nothing to be done for `install-exec-am'.
.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_permutation.h gsl_permute.h gsl_permute_char.h gsl_permute_complex_double.h gsl_permute_complex_float.h gsl_permute_complex_long_double.h gsl_permute_double.h gsl_permute_float.h gsl_permute_int.h gsl_permute_long.h gsl_permute_long_double.h gsl_permute_short.h gsl_permute_uchar.h gsl_permute_uint.h gsl_permute_ulong.h gsl_permute_ushort.h gsl_permute_vector.h gsl_permute_vector_char.h gsl_permute_vector_complex_double.h gsl_permute_vector_complex_float.h gsl_permute_vector_complex_long_double.h gsl_permute_vector_double.h gsl_permute_vector_float.h gsl_permute_vector_int.h gsl_permute_vector_long.h gsl_permute_vector_long_double.h gsl_permute_vector_short.h gsl_permute_vector_uchar.h gsl_permute_vector_uint.h gsl_permute_vector_ulong.h gsl_permute_vector_ushort.h '/usr/local/include/gsl'
Making install in combination
make[2]: Nothing to be done for `install-exec-am'.
.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_combination.h '/usr/local/include/gsl'
Making install in multiset
make[2]: Nothing to be done for `install-exec-am'.
.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_multiset.h '/usr/local/include/gsl'
Making install in sort
make[2]: Nothing to be done for `install-exec-am'.
.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_heapsort.h gsl_sort.h gsl_sort_char.h gsl_sort_double.h gsl_sort_float.h gsl_sort_int.h gsl_sort_long.h gsl_sort_long_double.h gsl_sort_short.h gsl_sort_uchar.h gsl_sort_uint.h gsl_sort_ulong.h gsl_sort_ushort.h gsl_sort_vector.h gsl_sort_vector_char.h gsl_sort_vector_double.h gsl_sort_vector_float.h gsl_sort_vector_int.h gsl_sort_vector_long.h gsl_sort_vector_long_double.h gsl_sort_vector_short.h gsl_sort_vector_uchar.h gsl_sort_vector_uint.h gsl_sort_vector_ulong.h gsl_sort_vector_ushort.h '/usr/local/include/gsl'
Making install in ieee-utils
make[2]: Nothing to be done for `install-exec-am'.
.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_ieee_utils.h '/usr/local/include/gsl'
Making install in cblas
.././install-sh -c -d '/usr/local/lib'
/bin/sh ../libtool --mode=install /usr/bin/install -c libgslcblas.la '/usr/local/lib'
libtool: install: /usr/bin/install -c .libs/libgslcblas.0.dylib /usr/local/lib/libgslcblas.0.dylib
libtool: install: (cd /usr/local/lib && { ln -s -f libgslcblas.0.dylib libgslcblas.dylib || { rm -f libgslcblas.dylib && ln -s libgslcblas.0.dylib libgslcblas.dylib; }; })
libtool: install: /usr/bin/install -c .libs/libgslcblas.lai /usr/local/lib/libgslcblas.la
libtool: install: /usr/bin/install -c .libs/libgslcblas.a /usr/local/lib/libgslcblas.a
libtool: install: chmod 644 /usr/local/lib/libgslcblas.a
libtool: install: ranlib /usr/local/lib/libgslcblas.a
.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_cblas.h '/usr/local/include/gsl'
Making install in blas
make[2]: Nothing to be done for `install-exec-am'.
.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_blas.h gsl_blas_types.h '/usr/local/include/gsl'
Making install in linalg
make[2]: Nothing to be done for `install-exec-am'.
.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_linalg.h '/usr/local/include/gsl'
Making install in eigen
make[2]: Nothing to be done for `install-exec-am'.
.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_eigen.h '/usr/local/include/gsl'
Making install in specfunc
make[2]: Nothing to be done for `install-exec-am'.
.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_sf.h gsl_sf_airy.h gsl_sf_bessel.h gsl_sf_clausen.h gsl_sf_coulomb.h gsl_sf_coupling.h gsl_sf_dawson.h gsl_sf_debye.h gsl_sf_dilog.h gsl_sf_elementary.h gsl_sf_ellint.h gsl_sf_elljac.h gsl_sf_erf.h gsl_sf_exp.h gsl_sf_expint.h gsl_sf_fermi_dirac.h gsl_sf_gamma.h gsl_sf_gegenbauer.h gsl_sf_hyperg.h gsl_sf_laguerre.h gsl_sf_lambert.h gsl_sf_legendre.h gsl_sf_log.h gsl_sf_mathieu.h gsl_sf_pow_int.h gsl_sf_psi.h gsl_sf_result.h gsl_sf_synchrotron.h gsl_sf_transport.h gsl_sf_trig.h gsl_sf_zeta.h gsl_specfunc.h '/usr/local/include/gsl'
Making install in dht
make[2]: Nothing to be done for `install-exec-am'.
.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_dht.h '/usr/local/include/gsl'
Making install in qrng
make[2]: Nothing to be done for `install-exec-am'.
.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_qrng.h '/usr/local/include/gsl'
Making install in rng
make[2]: Nothing to be done for `install-exec-am'.
.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_rng.h '/usr/local/include/gsl'
Making install in randist
make[2]: Nothing to be done for `install-exec-am'.
.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_randist.h '/usr/local/include/gsl'
Making install in fft
make[2]: Nothing to be done for `install-exec-am'.
.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_fft.h gsl_fft_complex.h gsl_fft_halfcomplex.h gsl_fft_real.h gsl_dft_complex.h gsl_dft_complex_float.h gsl_fft_complex_float.h gsl_fft_halfcomplex_float.h gsl_fft_real_float.h '/usr/local/include/gsl'
Making install in poly
make[2]: Nothing to be done for `install-exec-am'.
.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_poly.h '/usr/local/include/gsl'
Making install in fit
make[2]: Nothing to be done for `install-exec-am'.
.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_fit.h '/usr/local/include/gsl'
Making install in multifit
make[2]: Nothing to be done for `install-exec-am'.
.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_multifit.h gsl_multifit_nlin.h '/usr/local/include/gsl'
Making install in multilarge
make[2]: Nothing to be done for `install-exec-am'.
.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_multilarge.h '/usr/local/include/gsl'
Making install in rstat
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.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_rstat.h '/usr/local/include/gsl'
Making install in statistics
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.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_statistics.h gsl_statistics_char.h gsl_statistics_double.h gsl_statistics_float.h gsl_statistics_int.h gsl_statistics_long.h gsl_statistics_long_double.h gsl_statistics_short.h gsl_statistics_uchar.h gsl_statistics_uint.h gsl_statistics_ulong.h gsl_statistics_ushort.h '/usr/local/include/gsl'
Making install in siman
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.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_siman.h '/usr/local/include/gsl'
Making install in sum
make[2]: Nothing to be done for `install-exec-am'.
.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_sum.h '/usr/local/include/gsl'
Making install in integration
make[2]: Nothing to be done for `install-exec-am'.
.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_integration.h '/usr/local/include/gsl'
Making install in interpolation
make[2]: Nothing to be done for `install-exec-am'.
.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_interp.h gsl_spline.h gsl_interp2d.h gsl_spline2d.h '/usr/local/include/gsl'
Making install in histogram
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.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_histogram.h gsl_histogram2d.h '/usr/local/include/gsl'
Making install in ode-initval
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.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_odeiv.h '/usr/local/include/gsl'
Making install in ode-initval2
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.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_odeiv2.h '/usr/local/include/gsl'
Making install in roots
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.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_roots.h '/usr/local/include/gsl'
Making install in multiroots
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.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_multiroots.h '/usr/local/include/gsl'
Making install in min
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.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_min.h '/usr/local/include/gsl'
Making install in multimin
make[2]: Nothing to be done for `install-exec-am'.
.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_multimin.h '/usr/local/include/gsl'
Making install in monte
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.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_monte.h gsl_monte_vegas.h gsl_monte_miser.h gsl_monte_plain.h '/usr/local/include/gsl'
Making install in ntuple
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.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_ntuple.h '/usr/local/include/gsl'
Making install in diff
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.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_diff.h '/usr/local/include/gsl'
Making install in deriv
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.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_deriv.h '/usr/local/include/gsl'
Making install in cdf
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.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_cdf.h '/usr/local/include/gsl'
Making install in wavelet
make[2]: Nothing to be done for `install-exec-am'.
.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_wavelet.h gsl_wavelet2d.h '/usr/local/include/gsl'
Making install in bspline
make[2]: Nothing to be done for `install-exec-am'.
.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_bspline.h '/usr/local/include/gsl'
Making install in spblas
make[2]: Nothing to be done for `install-exec-am'.
.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_spblas.h '/usr/local/include/gsl'
Making install in spmatrix
make[2]: Nothing to be done for `install-exec-am'.
.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_spmatrix.h '/usr/local/include/gsl'
Making install in splinalg
make[2]: Nothing to be done for `install-exec-am'.
.././install-sh -c -d '/usr/local/include/gsl'
/usr/bin/install -c -m 644 gsl_splinalg.h '/usr/local/include/gsl'
Making install in doc
Making install in .
make[3]: Nothing to be done for `install-exec-am'.
.././install-sh -c -d '/usr/local/share/info'
mkdir: /usr/local/share/info: Permission denied make[3]: *** [install-info-am] Error 1 make[2]: *** [install-am] Error 2 make[1]: *** [install-recursive] Error 1 make: *** [install-recursive] Error 1 real 0m4.777s user 0m1.745s sys 0m1.385s
sudo outside of notebook¶.bash_profile so they are included in system variables¶%%bash
echo -e "\n#Add GSL to PATH for fastStructure" >> /Users/Sam/.bash_profile
echo "export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib" >> /Users/Sam/.bash_profile
echo 'export CFLAGS="-I/usr/local/include"' >> /Users/Sam/.bash_profile
echo 'export LDFLAGS="-L/usr/local/lib"' >> /Users/Sam/.bash_profile
cat /Users/Sam/.bash_profile
export PATH="$PATH:/usr/local/bin/FastQC" # added by Anaconda2 2.4.1 installer export PATH="/Users/Sam/Applications/anaconda/bin:$PATH" export LD_LIBRARY_PATH=:/usr/local/lib export CFLAGS="-I/usr/local/include" export LDFLAGS="-L/usr/local/lib" #Add GSL to PATH for fastStructure export LD_LIBRARY_PATH=:/usr/local/lib export CFLAGS="-I/usr/local/include" export LDFLAGS="-L/usr/local/lib"
%%bash
source /Users/Sam/.bash_profile
cd /Users/Sam/20160816_oly_gbs_fastStructure_analysis/fastStructure/vars/
/Users/Sam/20160816_oly_gbs_fastStructure_analysis/fastStructure/vars
%%bash
python setup.py build_ext --inplace
running build_ext cythoning utils.pyx to utils.c building 'utils' extension creating build creating build/temp.macosx-10.5-x86_64-2.7 /usr/bin/clang -fno-strict-aliasing -I/Users/Sam/Applications/anaconda/include -arch x86_64 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include -I. -I/Users/Sam/Applications/anaconda/include/python2.7 -c utils.c -o build/temp.macosx-10.5-x86_64-2.7/utils.o /usr/bin/clang -bundle -undefined dynamic_lookup -L/Users/Sam/Applications/anaconda/lib -arch x86_64 -arch x86_64 build/temp.macosx-10.5-x86_64-2.7/utils.o -L/Users/Sam/Applications/anaconda/lib -o /Users/Sam/20160816_oly_gbs_fastStructure_analysis/fastStructure/vars/utils.so Compiling admixprop.pyx because it changed. Compiling allelefreq.pyx because it changed. Compiling marglikehood.pyx because it changed. [1/3] Cythonizing admixprop.pyx [2/3] Cythonizing allelefreq.pyx [3/3] Cythonizing marglikehood.pyx running build_ext building 'admixprop' extension /usr/bin/clang -fno-strict-aliasing -I/Users/Sam/Applications/anaconda/include -arch x86_64 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include -I. -I/Users/Sam/Applications/anaconda/include/python2.7 -c admixprop.c -o build/temp.macosx-10.5-x86_64-2.7/admixprop.o /usr/bin/clang -fno-strict-aliasing -I/Users/Sam/Applications/anaconda/include -arch x86_64 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include -I. -I/Users/Sam/Applications/anaconda/include/python2.7 -c C_admixprop.c -o build/temp.macosx-10.5-x86_64-2.7/C_admixprop.o /usr/bin/clang -bundle -undefined dynamic_lookup -L/Users/Sam/Applications/anaconda/lib -arch x86_64 -arch x86_64 build/temp.macosx-10.5-x86_64-2.7/admixprop.o build/temp.macosx-10.5-x86_64-2.7/C_admixprop.o -L/Users/Sam/Applications/anaconda/lib -o /Users/Sam/20160816_oly_gbs_fastStructure_analysis/fastStructure/vars/admixprop.so building 'allelefreq' extension /usr/bin/clang -fno-strict-aliasing -I/Users/Sam/Applications/anaconda/include -arch x86_64 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include -I. -I/Users/Sam/Applications/anaconda/include/python2.7 -c allelefreq.c -o build/temp.macosx-10.5-x86_64-2.7/allelefreq.o -O3 /usr/bin/clang -fno-strict-aliasing -I/Users/Sam/Applications/anaconda/include -arch x86_64 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include -I. -I/Users/Sam/Applications/anaconda/include/python2.7 -c C_allelefreq.c -o build/temp.macosx-10.5-x86_64-2.7/C_allelefreq.o -O3 /usr/bin/clang -bundle -undefined dynamic_lookup -L/Users/Sam/Applications/anaconda/lib -arch x86_64 -arch x86_64 build/temp.macosx-10.5-x86_64-2.7/allelefreq.o build/temp.macosx-10.5-x86_64-2.7/C_allelefreq.o -L/Users/Sam/Applications/anaconda/lib -lgsl -lgslcblas -o /Users/Sam/20160816_oly_gbs_fastStructure_analysis/fastStructure/vars/allelefreq.so building 'marglikehood' extension /usr/bin/clang -fno-strict-aliasing -I/Users/Sam/Applications/anaconda/include -arch x86_64 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include -I. -I/Users/Sam/Applications/anaconda/include/python2.7 -c marglikehood.c -o build/temp.macosx-10.5-x86_64-2.7/marglikehood.o /usr/bin/clang -fno-strict-aliasing -I/Users/Sam/Applications/anaconda/include -arch x86_64 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include -I. -I/Users/Sam/Applications/anaconda/include/python2.7 -c C_marglikehood.c -o build/temp.macosx-10.5-x86_64-2.7/C_marglikehood.o /usr/bin/clang -bundle -undefined dynamic_lookup -L/Users/Sam/Applications/anaconda/lib -arch x86_64 -arch x86_64 build/temp.macosx-10.5-x86_64-2.7/marglikehood.o build/temp.macosx-10.5-x86_64-2.7/C_marglikehood.o -L/Users/Sam/Applications/anaconda/lib -o /Users/Sam/20160816_oly_gbs_fastStructure_analysis/fastStructure/vars/marglikehood.so
In file included from utils.c:242:
In file included from /Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from /Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1781:
/Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
^
utils.c:1497:30: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
utils.c:1520:19: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
utils.c:1678:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_6, 0+1, __pyx_v_x);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
utils.c:1703:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_6, 0+1, __pyx_t_2);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
utils.c:1757:30: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
utils.c:1780:19: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
utils.c:2166:30: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
utils.c:2189:19: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
utils.c:2523:30: warning: array index of '2' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
utils.c:2524:30: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
utils.c:2552:19: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
utils.c:2553:19: warning: array index of '2' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
utils.c:2821:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_13, 1, __pyx_t_1);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
utils.c:2880:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_11, 0+1, __pyx_t_1);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
utils.c:3053:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_4, 1, __pyx_t_13);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
utils.c:4440:19: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
__pyx_t_4 = PyTuple_GET_ITEM(sequence, 1);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
utils.c:5888:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_5, 0+1, __pyx_t_4);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
utils.c:7482:27: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
op->defaults_kwdict = PyTuple_GET_ITEM(res, 1);
^~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
utils.c:8813:13: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(args, 1, arg);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
In file included from utils.c:242:
In file included from /Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:27:
/Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1634:1: warning: unused function '_import_array' [-Wunused-function]
_import_array(void)
^
21 warnings generated.
In file included from admixprop.c:252:
In file included from /Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from /Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1781:
/Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
^
admixprop.c:1475:30: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
admixprop.c:1498:19: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
admixprop.c:1581:3: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_5, 1, __pyx_t_3);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
admixprop.c:1602:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_6, 0+1, __pyx_t_5);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
admixprop.c:1641:3: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_5, 1, __pyx_t_6);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
admixprop.c:1663:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_2, 0+1, __pyx_t_5);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
admixprop.c:1756:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_5, 0+1, ((PyObject *)__pyx_v_self->var));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
admixprop.c:1820:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_11, 0+1, __pyx_t_6);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
admixprop.c:1850:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_2, 0+1, __pyx_t_5);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
admixprop.c:1944:3: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_3, 1, __pyx_t_2);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
admixprop.c:2254:3: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_4, 1, __pyx_t_3);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
admixprop.c:2323:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_1, 0+1, ((PyObject *)__pyx_v_self->var));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
admixprop.c:2434:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_7, 0+1, ((PyObject *)__pyx_v_self->var));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
admixprop.c:2498:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_12, 0+1, __pyx_t_3);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
admixprop.c:2528:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_2, 0+1, __pyx_t_7);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
admixprop.c:2870:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_2, 0+1, __pyx_t_7);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
admixprop.c:3067:9: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_6, 0+1, __pyx_t_3);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
admixprop.c:3153:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_7, 0+1, ((PyObject *)__pyx_v_self->var));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
admixprop.c:3246:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_5, 0+1, ((PyObject *)__pyx_v_self->var));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
admixprop.c:3310:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_15, 0+1, __pyx_t_6);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
admixprop.c:3340:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_3, 0+1, __pyx_t_5);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
admixprop.c:4732:19: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
__pyx_t_4 = PyTuple_GET_ITEM(sequence, 1);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
In file included from admixprop.c:252:
In file included from /Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:27:
/Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1634:1: warning: unused function '_import_array' [-Wunused-function]
_import_array(void)
^
24 warnings generated.
In file included from allelefreq.c:259:
In file included from /Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from /Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1781:
/Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
^
allelefreq.c:1534:30: warning: array index of '2' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:1535:30: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:1563:19: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:1564:19: warning: array index of '2' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:1672:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_7, 1, __pyx_t_6);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:1694:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_4, 0+1, __pyx_t_7);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:1729:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_6, 1, __pyx_t_7);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:1751:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_5, 0+1, __pyx_t_6);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:1806:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_6, 1, __pyx_int_1);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:1827:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_7, 0+1, __pyx_t_6);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:1879:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_4, 0+1, __pyx_t_6);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:1933:3: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_5, 1, __pyx_t_6);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:1955:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_7, 0+1, __pyx_t_5);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:2036:3: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_6, 1, __pyx_t_10);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:2058:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_7, 0+1, __pyx_t_6);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:2154:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_6, 0+1, ((PyObject *)__pyx_v_self->var_beta));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:2183:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_11, 0+1, __pyx_t_10);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:2213:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_7, 0+1, __pyx_t_6);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:2260:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_11, 0+1, ((PyObject *)__pyx_v_self->var_gamma));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:2289:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_5, 0+1, __pyx_t_8);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:2319:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_3, 0+1, __pyx_t_11);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:2439:3: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_3, 1, __pyx_t_2);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:3142:3: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_4, 1, __pyx_t_3);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:3192:3: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_2, 1, __pyx_t_3);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:3272:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_5, 0+1, ((PyObject *)__pyx_v_self->var_beta));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:3363:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_3, 0+1, ((PyObject *)__pyx_v_self->var_gamma));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:3456:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_7, 0+1, ((PyObject *)__pyx_v_self->var_beta));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:3485:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_9, 0+1, __pyx_t_2);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:3515:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_5, 0+1, __pyx_t_7);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:3562:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_9, 0+1, ((PyObject *)__pyx_v_self->var_gamma));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:3591:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_8, 0+1, __pyx_t_3);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:3621:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_4, 0+1, __pyx_t_9);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:3745:3: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_4, 1, __pyx_t_3);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:3938:19: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
__pyx_t_1 = PyTuple_GET_ITEM(sequence, 1);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:4017:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_7, 0+1, ((PyObject *)__pyx_v_var_beta));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:4036:3: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_5, 1, __pyx_t_4);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:4083:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_3, 0+1, ((PyObject *)__pyx_v_var_gamma));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:4102:3: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_1, 1, __pyx_t_7);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:4195:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_2, 0+1, ((PyObject *)__pyx_v_self->var_beta));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:4224:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_9, 0+1, __pyx_t_3);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:4254:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_1, 0+1, __pyx_t_2);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:4301:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_9, 0+1, ((PyObject *)__pyx_v_self->var_gamma));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:4330:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_8, 0+1, __pyx_t_4);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:4360:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_5, 0+1, __pyx_t_9);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:4630:3: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_4, 1, ((PyObject *)__pyx_v_var_gamma));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:5259:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_7, 0+1, __pyx_t_5);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:5553:9: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_8, 0+1, __pyx_t_3);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:5639:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_5, 0+1, ((PyObject *)__pyx_v_self->var_beta));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:5697:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_8, 0+1, ((PyObject *)__pyx_v_self->var_gamma));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:5812:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_6, 0+1, ((PyObject *)__pyx_v_self->var_beta));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:5841:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_12, 0+1, __pyx_t_2);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:5871:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_5, 0+1, __pyx_t_6);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:5918:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_12, 0+1, ((PyObject *)__pyx_v_self->var_gamma));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:5947:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_1, 0+1, __pyx_t_8);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:5977:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_3, 0+1, __pyx_t_12);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:6113:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_6, 0+1, ((PyObject *)__pyx_v_self->var_beta));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:6140:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_7, 0+1, ((PyObject *)__pyx_v_self->var_gamma));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:6292:9: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_10, 0+1, __pyx_t_7);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:6385:9: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_10, 0+1, __pyx_t_12);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
allelefreq.c:7818:19: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
__pyx_t_4 = PyTuple_GET_ITEM(sequence, 1);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
In file included from allelefreq.c:259:
In file included from /Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:27:
/Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1634:1: warning: unused function '_import_array' [-Wunused-function]
_import_array(void)
^
62 warnings generated.
In file included from marglikehood.c:252:
In file included from /Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from /Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1781:
/Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
^
marglikehood.c:1456:30: warning: array index of '2' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
marglikehood.c:1457:30: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
marglikehood.c:1485:19: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
marglikehood.c:1486:19: warning: array index of '2' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
marglikehood.c:1595:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_7, 0+1, ((PyObject *)__pyx_v_psi->var));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
marglikehood.c:1622:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_8, 0+1, ((PyObject *)__pyx_v_psi->alpha));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
marglikehood.c:1663:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_11, 0+1, ((PyObject *)__pyx_v_psi->xi));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
marglikehood.c:1688:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_11, 0+1, __pyx_t_8);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
marglikehood.c:1801:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_8, 0+1, __pyx_t_6);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
marglikehood.c:1870:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_11, 0+1, __pyx_t_8);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
marglikehood.c:1945:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_11, 0+1, ((PyObject *)__pyx_v_pi->var_beta));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
marglikehood.c:1972:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_8, 0+1, ((PyObject *)__pyx_v_pi->beta));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
marglikehood.c:2013:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_3, 0+1, ((PyObject *)__pyx_v_pi->zetabeta));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
marglikehood.c:2038:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_3, 0+1, __pyx_t_8);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
marglikehood.c:2082:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_3, 0+1, ((PyObject *)__pyx_v_pi->var_gamma));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
marglikehood.c:2113:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_2, 0+1, ((PyObject *)__pyx_v_pi->gamma));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
marglikehood.c:2154:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_7, 0+1, ((PyObject *)__pyx_v_pi->zetagamma));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
marglikehood.c:2179:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_7, 0+1, __pyx_t_2);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
marglikehood.c:2225:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_2, 0+1, __pyx_t_5);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
marglikehood.c:2259:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_7, 0+1, __pyx_t_2);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
marglikehood.c:2344:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_4, 0+1, ((PyObject *)__pyx_v_pi->var_beta));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
marglikehood.c:2371:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_7, 0+1, ((PyObject *)__pyx_v_pi->var_gamma));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
marglikehood.c:2420:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_2, 0+1, ((PyObject *)__pyx_v_pi->Lambda));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
marglikehood.c:2477:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_5, 0+1, __pyx_t_1);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
marglikehood.c:2609:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_2, 0+1, __pyx_t_6);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
marglikehood.c:2684:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_1, 0+1, ((PyObject *)__pyx_v_pi->zetabeta));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
marglikehood.c:2714:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_8, 0+1, ((PyObject *)__pyx_v_pi->zetagamma));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
marglikehood.c:2743:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_4, 0+1, __pyx_t_2);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
marglikehood.c:2784:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_8, 0+1, ((PyObject *)__pyx_v_pi->var_beta));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
marglikehood.c:2820:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_1, 0+1, ((PyObject *)__pyx_v_pi->zetabeta));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
marglikehood.c:2864:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_8, 0+1, ((PyObject *)__pyx_v_pi->var_gamma));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
marglikehood.c:2904:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_1, 0+1, ((PyObject *)__pyx_v_pi->zetagamma));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
marglikehood.c:2949:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_6, 0+1, __pyx_t_4);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
marglikehood.c:4398:19: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
__pyx_t_4 = PyTuple_GET_ITEM(sequence, 1);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
In file included from marglikehood.c:252:
In file included from /Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:27:
/Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1634:1: warning: unused function '_import_array' [-Wunused-function]
_import_array(void)
^
36 warnings generated.
These warnings might be OK...
cd /Users/Sam/20160816_oly_gbs_fastStructure_analysis/fastStructure/
/Users/Sam/20160816_oly_gbs_fastStructure_analysis/fastStructure
%%bash
python setup.py build_ext --inplace
running build_ext cythoning parse_bed.pyx to parse_bed.c building 'parse_bed' extension creating build creating build/temp.macosx-10.5-x86_64-2.7 /usr/bin/clang -fno-strict-aliasing -I/Users/Sam/Applications/anaconda/include -arch x86_64 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include -I. -I/Users/Sam/Applications/anaconda/include/python2.7 -c parse_bed.c -o build/temp.macosx-10.5-x86_64-2.7/parse_bed.o /usr/bin/clang -bundle -undefined dynamic_lookup -L/Users/Sam/Applications/anaconda/lib -arch x86_64 -arch x86_64 build/temp.macosx-10.5-x86_64-2.7/parse_bed.o -L/Users/Sam/Applications/anaconda/lib -o /Users/Sam/20160816_oly_gbs_fastStructure_analysis/fastStructure/parse_bed.so running build_ext cythoning parse_str.pyx to parse_str.c building 'parse_str' extension /usr/bin/clang -fno-strict-aliasing -I/Users/Sam/Applications/anaconda/include -arch x86_64 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include -I. -I/Users/Sam/Applications/anaconda/include/python2.7 -c parse_str.c -o build/temp.macosx-10.5-x86_64-2.7/parse_str.o /usr/bin/clang -bundle -undefined dynamic_lookup -L/Users/Sam/Applications/anaconda/lib -arch x86_64 -arch x86_64 build/temp.macosx-10.5-x86_64-2.7/parse_str.o -L/Users/Sam/Applications/anaconda/lib -o /Users/Sam/20160816_oly_gbs_fastStructure_analysis/fastStructure/parse_str.so running build_ext cythoning fastStructure.pyx to fastStructure.c building 'fastStructure' extension /usr/bin/clang -fno-strict-aliasing -I/Users/Sam/Applications/anaconda/include -arch x86_64 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include -I. -Ivars/ -I/Users/Sam/Applications/anaconda/include/python2.7 -c fastStructure.c -o build/temp.macosx-10.5-x86_64-2.7/fastStructure.o /usr/bin/clang -bundle -undefined dynamic_lookup -L/Users/Sam/Applications/anaconda/lib -arch x86_64 -arch x86_64 build/temp.macosx-10.5-x86_64-2.7/fastStructure.o -L/Users/Sam/Applications/anaconda/lib -o /Users/Sam/20160816_oly_gbs_fastStructure_analysis/fastStructure/fastStructure.so
In file included from parse_bed.c:242:
In file included from /Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from /Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1781:
/Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
^
parse_bed.c:1636:3: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_2, 1, __pyx_n_s_r);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
parse_bed.c:1732:3: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_2, 1, __pyx_n_s_r);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
parse_bed.c:1837:3: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_7, 1, __pyx_t_6);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
parse_bed.c:1872:3: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_7, 1, __pyx_n_s_rb);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
parse_bed.c:2250:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_11, 0+1, __pyx_t_6);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
parse_bed.c:2313:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_6, 1, __pyx_t_11);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
parse_bed.c:3722:19: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
__pyx_t_4 = PyTuple_GET_ITEM(sequence, 1);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
parse_bed.c:5567:27: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
op->defaults_kwdict = PyTuple_GET_ITEM(res, 1);
^~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
In file included from parse_bed.c:242:
In file included from /Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:27:
/Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1634:1: warning: unused function '_import_array' [-Wunused-function]
_import_array(void)
^
10 warnings generated.
In file included from parse_str.c:242:
In file included from /Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from /Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1781:
/Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
^
parse_str.c:1332:3: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_2, 1, __pyx_n_s_r);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
parse_str.c:1462:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_9, 0+1, __pyx_t_2);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
parse_str.c:1524:3: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_3, 1, __pyx_v_L);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
parse_str.c:1639:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_7, 0+1, __pyx_v_locus);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
parse_str.c:1960:11: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_3, 1, __pyx_v_l);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
parse_str.c:2012:11: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_8, 1, __pyx_v_l);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
parse_str.c:3442:19: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
__pyx_t_4 = PyTuple_GET_ITEM(sequence, 1);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
In file included from parse_str.c:242:
In file included from /Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:27:
/Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1634:1: warning: unused function '_import_array' [-Wunused-function]
_import_array(void)
^
9 warnings generated.
In file included from fastStructure.c:242:
In file included from /Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from /Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1781:
/Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
^
fastStructure.c:1756:30: warning: array index of '5' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
case 6: values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:1757:30: warning: array index of '4' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
case 5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:1758:30: warning: array index of '3' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:1759:30: warning: array index of '2' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:1760:30: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:1803:19: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:1804:19: warning: array index of '2' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:1805:19: warning: array index of '3' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:1806:19: warning: array index of '4' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:1807:19: warning: array index of '5' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:2010:3: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_1, 1, __pyx_t_3);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:2021:3: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_1, 1, __pyx_n_s_w);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:2202:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_1, 1, __pyx_v_indices);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:2262:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_3, 1, __pyx_t_10);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:2287:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_6, 1, __pyx_t_3);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:2290:7: warning: array index of '2' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_6, 2, __pyx_v_prior);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:2426:11: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_2, 0+1, __pyx_t_3);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:2597:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_3, 1, __pyx_t_10);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:2600:7: warning: array index of '2' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_3, 2, __pyx_v_prior);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:2781:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_10, 1, __pyx_t_3);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:2806:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_2, 1, __pyx_t_10);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:2809:7: warning: array index of '2' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_2, 2, __pyx_v_prior);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:2903:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_3, 1, __pyx_t_10);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:2914:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_3, 1, __pyx_n_s_a);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:2940:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_6, 1, __pyx_t_2);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:2965:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_1, 0+1, __pyx_t_2);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:3159:3: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_1, 1, __pyx_t_3);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:3170:3: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_1, 1, __pyx_n_s_a);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:3235:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_6, 0+1, __pyx_t_2);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:3316:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_10, 0+1, __pyx_t_1);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:3438:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_6, 0+1, __pyx_t_3);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:3634:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_3, 1, __pyx_t_6);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:3645:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_3, 1, __pyx_n_s_a);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:3730:9: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_3, 0+1, __pyx_t_10);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:3952:3: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_2, 1, __pyx_t_3);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:3963:3: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_2, 1, __pyx_n_s_a);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:4004:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_10, 0+1, __pyx_t_6);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:4046:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_1, 0+1, __pyx_t_6);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:4088:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_10, 0+1, __pyx_t_6);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:4163:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_2, 1, __pyx_t_3);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:4174:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_2, 1, __pyx_n_s_a);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:4215:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_8, 0+1, ((PyObject *)__pyx_v_meandeviance));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:4244:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_6, 1, __pyx_t_13);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:4269:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_10, 0+1, __pyx_t_13);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:4330:3: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_3, 1, ((PyObject *)__pyx_v_psi->var));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:4338:3: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_2, 1, ((PyObject *)__pyx_v_pi->var_beta));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:4346:3: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_10, 1, ((PyObject *)__pyx_v_pi->var_gamma));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:4384:3: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_13, 1, __pyx_v_P);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:4387:3: warning: array index of '2' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_13, 2, __pyx_v_other);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:4684:3: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_2, 1, __pyx_t_1);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:4799:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_2, 0+1, ((PyObject *)__pyx_v_P));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:4888:3: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_3, 1, __pyx_t_2);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:5003:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_3, 0+1, ((PyObject *)__pyx_v_P));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:5098:3: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_3, 1, __pyx_t_6);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:5213:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_3, 0+1, ((PyObject *)__pyx_v_P));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:5264:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_5, 0+1, __pyx_t_6);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:5496:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_4, 1, __pyx_t_7);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:5557:23: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
__pyx_t_5 = PyTuple_GET_ITEM(sequence, 1);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:5607:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_6, 1, __pyx_t_5);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:5775:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_7, 1, __pyx_t_5);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:5822:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_5, 1, __pyx_t_6);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:5845:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_10, 1, __pyx_t_7);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:5876:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_7, 1, __pyx_t_10);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:6134:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_10, 1, __pyx_t_7);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:6181:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_7, 1, __pyx_t_5);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:6204:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_3, 1, __pyx_t_10);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:6235:5: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_10, 1, __pyx_t_3);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:6372:9: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_4, 0+1, __pyx_t_10);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:6714:11: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_3, 0+1, __pyx_t_22);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:6765:11: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_21, 0+1, __pyx_t_23);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:6847:7: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
PyTuple_SET_ITEM(__pyx_t_22, 0+1, __pyx_v_deviances);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:54:37: note: instantiated from:
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v)
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
fastStructure.c:8251:19: warning: array index of '1' indexes past the end of an array (that contains 1 elements) [-Warray-bounds]
__pyx_t_4 = PyTuple_GET_ITEM(sequence, 1);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:50:34: note: instantiated from:
#define PyTuple_GET_ITEM(op, i) (((PyTupleObject *)(op))->ob_item[i])
^
/Users/Sam/Applications/anaconda/include/python2.7/tupleobject.h:26:5: note: array 'ob_item' declared here
PyObject *ob_item[1];
^
In file included from fastStructure.c:242:
In file included from /Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:27:
/Users/Sam/Applications/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1634:1: warning: unused function '_import_array' [-Wunused-function]
_import_array(void)
^
74 warnings generated.
These warnings might be OK...
%%bash
time python structure.py -K 3 \
--input=/Users/Sam/20160715_pyrad_outfiles/oly_gbs_pyrad.str \
--output=/Users/Sam/20160816_oly_gbs_fastStructure_analysis/genotypes_output
Traceback (most recent call last):
File "structure.py", line 170, in <module>
G = parse_bed.load(params['inputfile'])
File "parse_bed.pyx", line 18, in parse_bed.load (parse_bed.c:1638)
handle = open(file+'.fam','r')
IOError: [Errno 2] No such file or directory: '/Users/Sam/20160715_pyrad_outfiles/oly_gbs_pyrad.str.fam'
real 0m1.641s
user 0m0.296s
sys 0m0.347s