branch

• bugfix/default-run-all
• bugfix/red_metakey
• cattle_biosample_id
• dev/control_balance_pipelines
• dev/report_transcriptomic
• experimental/gb1_cleanup
• experimental/test_hive
• feature/bioproject_tracking
• feature/dtol_tracking
• feature/ignore_insert
• feature/stable_id_overlap
• feature/stats_from_gff
• features/core_like_to_delete
• fix/long_read_download
• fix/md5_issue
• fix/py_transcriptomic_scripts
• fix/removed_unused_varaible_strain
• fix/unused_strain_variable
• hot-fix/busco_protein_name
• hotfix/fix_registry_column_name
• hotfix/lower_case
• hotfix/quotes_in_sql
• hotfix/read_count
• hotfix/skip_if_file_exists
• hotfix/transcriptomic_script
• hotfix/transcriptomic
• hotfix/travis_bad_import
• hotfix/update_aqua_faang
• leannehaggerty-patch-1
• leannehaggerty-patch-2

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