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..
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1.fa
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1.gff
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agat_convert_bed2gff_1.gff
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agat_convert_genscan2gff_1.gff
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agat_convert_mfannot2gff_1.gff
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agat_convert_sp_gff2bed_1.gff
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agat_convert_sp_gff2gtf_1.gff
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agat_convert_sp_gff2tsv_1.tsv
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agat_convert_sp_gff2zff_1.gff
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agat_sp_add_introns_1.gff
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agat_sp_add_start_and_stop_1.gff
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agat_sp_alignment_output_style_1.gff
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agat_sp_compare_two_annotations_1.txt
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agat_sp_complement_annotations_1.gff
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agat_sp_ensembl_output_style_1.gff
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agat_sp_extract_attributes_1.txt
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agat_sp_extract_sequences_1.fa
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agat_sp_extract_sequences_full.fa
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agat_sp_extract_sequences_merge.fa
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agat_sp_extract_sequences_split.fa
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agat_sp_filter_by_ORF_size_sup100.gff
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agat_sp_filter_by_locus_distance_1.gff
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agat_sp_filter_feature_by_attribute_presence_1.gff
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agat_sp_filter_feature_by_attribute_value_1.gff
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agat_sp_filter_feature_from_keep_list_1.gff
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agat_sp_filter_feature_from_keep_list_1.txt
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agat_sp_filter_feature_from_kill_list_1.gff
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agat_sp_filter_feature_from_kill_list_1.txt
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agat_sp_filter_gene_by_intron_numbers_1.gff
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agat_sp_filter_gene_by_length_1.gff
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agat_sp_filter_incomplete_gene_coding_models_1.gff
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agat_sp_filter_incomplete_gene_coding_models_incomplete_1.gff
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agat_sp_filter_record_by_coordinates_1.gff
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agat_sp_filter_record_by_coordinates_1.tsv
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agat_sp_fix_cds_phases_1.gff
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agat_sp_fix_fusion_1.txt
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agat_sp_fix_longest_ORF_1.txt
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agat_sp_flag_premature_stop_codons_1.gff
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agat_sp_functional_statistics_1.txt
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agat_sp_keep_longest_isoform_1.gff
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agat_sp_kraken_assess_liftover_1.gff
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agat_sp_list_short_introns_1.txt
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agat_sp_manage_IDs_1.gff
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agat_sp_manage_UTRs_1.gff
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agat_sp_manage_attributes_1.gff
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agat_sp_manage_introns_1.txt
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agat_sp_merge_annotations_1.gff
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agat_sp_prokka_fix_fragmented_gene_annotations_1.fa
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agat_sp_prokka_fix_fragmented_gene_annotations_1.gff
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agat_sp_sensitivity_specificity_1.txt
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agat_sp_separate_by_record_type_1.gff
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agat_sp_statistics_1.txt
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agat_sp_webApollo_compliant_1.gff
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agat_sq_add_hash_tag_1.gff
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agat_sq_add_locus_tag_1.gff
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agat_sq_list_attributes_1.txt
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agat_sq_manage_IDs_1.gff
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agat_sq_remove_redundant_entries_1.gff
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agat_sq_stat_basic_1.gff
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prokka_bacteria_sprot.fa
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prokka_cav_10DC88.fa
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prokka_cav_10DC88.gff
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test.bed
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test.genscan
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test.mfannot
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test_kraken.gtf
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test_minimap2.bam
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test_minimap2.sam
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