|
..
|
|
scanpy_MB243-Nuclei_analysis.ipynb
|
|
.DS_Store
|
|
HTseq.sh
|
|
MB243-Nuclei_GSEA_clone_analysis.R
|
|
Readme.md
|
|
STAR_align.sh
|
|
bsub_GTseq_infercnv.sh
|
|
bsub_MB243-Nuclei_infercnv.sh
|
|
bwa_alignment_hg19.sh
|
|
correlation_analysis_DM_DNA_RNA.R
|
|
create_smartseq_countMatrix_HTSeq.R
|
|
fastq_screen_scDNA.sh
|
|
fastq_screen_scRNA.sh
|
|
fastqc_scDNA.sh
|
|
fastqc_scRNA.sh
|
|
gtDNA_trimming.sh
|
|
gtRNA_trimming.sh
|
|
infercnv_analysis_GTseq.R
|
|
infercnv_analysis_nuclei.R
|
|
infercnv_prepare_input_GTseq.R
|
|
infercnv_prepare_input_MB243-Nuclei.R
|
|
make_GenexCell_matrix.R
|
|
picard_markduplicates_scDNA.sh
|
|
plot_scCNV_gene_heatmap.R
|
|
visualize_scDNA_scRNA_clone_correlation.R
|