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..
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_static
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figures
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Makefile
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api.rst
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augur.align.rst
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augur.ancestral.rst
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augur.clades.rst
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augur.distance.rst
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augur.export.rst
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augur.filenames.rst
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augur.filter.rst
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augur.frequencies.rst
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augur.frequency_estimators.rst
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augur.lbi.rst
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augur.mask.rst
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augur.parse.rst
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augur.reconstruct_sequences.rst
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augur.refine.rst
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augur.rst
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augur.sequence_traits.rst
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augur.titer_model.rst
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augur.titers.rst
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augur.traits.rst
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augur.translate.rst
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augur.tree.rst
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augur.utils.rst
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augur.validate.rst
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augur.version.rst
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auspice.md
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authors.rst
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breaking.md
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cli.rst
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conf.py
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envvars.rst
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examples.rst
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exportv.md
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index.rst
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installation.md
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make.bat
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upgrading.rst
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usage.rst
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