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bnediction's
repositories
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models
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1 - Binarization and synthetic data generation.ipynb
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2.1 - synthetic scRNA-Seq from star network.ipynb
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2.2 - synthetic scRNA-Seq from mutually exclusive switch network.ipynb
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2.3 - synthetic scRNA-Seq from cellular reprogramming network.ipynb
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2.4 - synthetic scRNA-Seq from hematopoiesis network.ipynb
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3.1 - STREAM - Trajectory reconstruction for star network synthetic scRNA data.ipynb
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3.2 - STREAM - Trajectory reconstruction for switch network synthetic scRNA data.ipynb
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3.3 - STREAM - Trajectory reconstruction for reprogramming network synthetic scRNA data.ipynb
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3.4 - STREAM - Trajectory reconstruction for hematopoiesis network synthetic scRNA data.ipynb
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Variable Gene Selection (GSE122466 Retina).ipynb
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Variable Gene Selection (GSE156234 Macrophages).ipynb
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Variable Gene Selection (GSE81682 Hematopoiesis).ipynb
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expression_profile_plots.ipynb
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.gitignore
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Dockerfile
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Makefile
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README.md
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cache_scBoolSeq_Nestorowa_simulation_criteria.csv
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start_stream.sh
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