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..
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02_filt_comp_all
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02_filt_comp_nonhmp
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cdbg_ids_reads_comp
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delete_files
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deprecated
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hash_corncob
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hmp_humann2_logs
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human_contam_file_sizes
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rgnv_sgc_original_results
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test_charcoal
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test_corncob_dda
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test_gather_lineage_summarize
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test_megahit_diginorm_nocat
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test_roary
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test_sgc_dominator_abund
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testing
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try_diffex
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var_imp_genome_plot
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wgcna
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test_concat_rule.ipynb
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analyze_at_least_5_hash_abund.R
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at_least_5_hash_corncob.R
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calc_acc.R
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check_keggrestapi_kos.R
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combine_hmp_and_libs.py
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compare_pangenome_corncob_vs_hash_corncob.R
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corncob_trial.R
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corncob_trial_simple.R
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count_intersects.R
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diversity_of_samples.R
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eggnog_enrich.R
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ggplotConfusionMatrix.R
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gtdbtk.R
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look_at_unassembled_hashes_identity.R
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make_at_least_5_of_6_hashes_abundance_table.R
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make_hmp2_metadata_metatranscriptomics.R
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megahit_flagstat.R
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plot_comp_scale_manual.R
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plot_gather_genomes_sgc.R
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plot_gather_output_loo.R
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plot_nbhd_sizes.R
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plot_sgc_and_db_gather.R
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plot_sig_pathways_genes.R
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prelim-sgc-query-results.R
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summarize_at_least_5_hash_abund.R
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visualize_sgc_nbhd_sig_comp.R
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