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..
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apa_4mer_pos_weights
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folding
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predictions
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analyze_aparent_conv_layer_1_cleavage_alien1_legacy.ipynb
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analyze_aparent_conv_layer_1_cleavage_alien1_memory_efficient_legacy.ipynb
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analyze_aparent_conv_layer_1_scaled_alien2_legacy.ipynb
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analyze_aparent_conv_layers_alien1_legacy.ipynb
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analyze_aparent_conv_layers_alien2_legacy.ipynb
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analyze_aparent_designed_mpra_combined.ipynb
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analyze_aparent_designed_mpra_combined_legacy.ipynb
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analyze_aparent_designed_mpra_complex_cut_variants_legacy.ipynb
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analyze_aparent_designed_mpra_lofi_vs_hifi_legacy.ipynb
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analyze_aparent_designed_mpra_pathogenic_utrs_legacy.ipynb
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analyze_aparent_designed_mpra_rare_functional_variants_detailed_canonical_cse_legacy.ipynb
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analyze_aparent_designed_mpra_rare_functional_variants_detailed_combined_legacy.ipynb
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analyze_aparent_designed_mpra_rare_functional_variants_detailed_cryptic_cse_legacy.ipynb
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analyze_aparent_designed_mpra_rare_functional_variants_detailed_folding_legacy.ipynb
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analyze_aparent_designed_mpra_rare_functional_variants_detailed_tgta_legacy.ipynb
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analyze_aparent_designed_mpra_rare_functional_variants_detailed_tgtct_legacy.ipynb
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analyze_aparent_designed_mpra_rare_functional_variants_summary_legacy.ipynb
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analyze_aparent_designed_mpra_seqprop_cut_detailed_legacy.ipynb
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analyze_aparent_designed_mpra_seqprop_cut_summary_legacy.ipynb
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analyze_aparent_designed_mpra_seqprop_iso_detailed_legacy.ipynb
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analyze_aparent_designed_mpra_seqprop_iso_summary_legacy.ipynb
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analyze_aparent_designed_mpra_stats_legacy.ipynb
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analyze_aparent_designed_mpra_store_variant_table_legacy.ipynb
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analyze_aparent_designed_mpra_tgta_mutation_maps_legacy.ipynb
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analyze_aparent_designed_mpra_variant_summary_legacy.ipynb
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analyze_aparent_designed_mpra_wildtype_human_apa_legacy.ipynb
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analyze_leslie_apadb_celltypes_basic_stats_legacy.ipynb
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analyze_leslie_apadb_celltypes_cleavage_predictions_legacy.ipynb
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analyze_leslie_apadb_celltypes_combined_legacy.ipynb
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analyze_leslie_apadb_celltypes_crossvalidate_isoform_predictions_legacy.ipynb
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analyze_leslie_apadb_celltypes_differential_usage_legacy.ipynb
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analyze_leslie_apadb_celltypes_isoform_predictions_legacy.ipynb
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analyze_random_mpra_alien1_cleavage_logodds_ratios.ipynb
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analyze_random_mpra_alien1_isoform_logodds_ratios.ipynb
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analyze_random_mpra_alien1_logistic_regression.ipynb
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analyze_random_mpra_alien2_isoform_logodds_ratios.ipynb
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analyze_random_mpra_alien2_logistic_regression.ipynb
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analyze_random_mpra_combined_logistic_regression.ipynb
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analyze_random_mpra_tomm5_logistic_regression.ipynb
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evaluate_aparent_random_mpra.ipynb
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evaluate_aparent_random_mpra_legacy.ipynb
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analyze_aparent_conv_layers_helpers.py
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analyze_aparent_designed_mpra_helpers.py
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analyze_leslie_apadb_celltypes_helpers.py
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analyze_random_mpra_isoform_logodds_ratios_helpers.py
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analyze_random_mpra_logistic_regression_helpers.py
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