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..
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R_outputs
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__pycache__
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figures
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latex
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OLD_compare_TI_ewing.ipynb
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OLD_compare_TI_retina.ipynb
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compare_TI_categorical.ipynb
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compare_TI_clus_example.ipynb
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compare_TI_synthetic.ipynb
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cytotrace.ipynb
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figures_SHAREseq.ipynb
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figures_complex_structure.ipynb
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figures_ewing.ipynb
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figures_retina.ipynb
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figures_supervision_ordinal.ipynb
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hematopoiesis1a-RNA_preprocessing.ipynb
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hematopoiesis1b-ATAC_by_ArchR.ipynb
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hematopoiesis1c-ATAC_motifs.ipynb
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hematopoiesis2-Integration.ipynb
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comparison_utils.py
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integration_utils.py
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run_monocle_slingshot_tuned.R
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scan_for_kmers_motifs.R
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stream2_chromVar_shareseq.R
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