|
..
|
|
figures
|
|
BevertonHoltRDD.Rd
|
|
MizerParams-class.Rd
|
|
MizerParams.Rd
|
|
MizerSim-class.Rd
|
|
MizerSim.Rd
|
|
N.Rd
|
|
NOther.Rd
|
|
NS_interaction.Rd
|
|
NS_params.Rd
|
|
NS_sim.Rd
|
|
NS_species_params.Rd
|
|
NS_species_params_gears.Rd
|
|
RickerRDD.Rd
|
|
SheperdRDD.Rd
|
|
addSpecies.Rd
|
|
age_mat.Rd
|
|
age_mat_vB.Rd
|
|
animateSpectra.Rd
|
|
box_pred_kernel.Rd
|
|
calibrateBiomass.Rd
|
|
calibrateNumber.Rd
|
|
calibrateYield.Rd
|
|
compareParams.Rd
|
|
constantEggRDI.Rd
|
|
constantRDD.Rd
|
|
constant_other.Rd
|
|
customFunction.Rd
|
|
default_pred_kernel_params.Rd
|
|
defaults_edition.Rd
|
|
different.Rd
|
|
distanceMaxRelRDI.Rd
|
|
distanceSSLogN.Rd
|
|
double_sigmoid_length.Rd
|
|
emptyParams.Rd
|
|
finalN.Rd
|
|
finalNOther.Rd
|
|
gear_params.Rd
|
|
getBiomass.Rd
|
|
getCommunitySlope.Rd
|
|
getComponent.Rd
|
|
getCriticalFeedingLevel.Rd
|
|
getDiet.Rd
|
|
getEGrowth.Rd
|
|
getERepro.Rd
|
|
getEReproAndGrowth.Rd
|
|
getESpawning.Rd
|
|
getEffort.Rd
|
|
getEncounter.Rd
|
|
getFMort.Rd
|
|
getFMortGear.Rd
|
|
getFeedingLevel.Rd
|
|
getGrowthCurves.Rd
|
|
getInteraction.Rd
|
|
getM2.Rd
|
|
getM2Background.Rd
|
|
getMeanMaxWeight.Rd
|
|
getMeanWeight.Rd
|
|
getMort.Rd
|
|
getN.Rd
|
|
getParams.Rd
|
|
getPhiPrey.Rd
|
|
getPredMort.Rd
|
|
getPredRate.Rd
|
|
getProportionOfLargeFish.Rd
|
|
getRDD.Rd
|
|
getRDI.Rd
|
|
getRates.Rd
|
|
getReproductionLevel.Rd
|
|
getResourceDynamics.Rd
|
|
getResourceMort.Rd
|
|
getSSB.Rd
|
|
getTimes.Rd
|
|
getYield.Rd
|
|
getYieldGear.Rd
|
|
getZ.Rd
|
|
get_f0_default.Rd
|
|
get_gamma_default.Rd
|
|
get_h_default.Rd
|
|
get_initial_n.Rd
|
|
get_ks_default.Rd
|
|
get_phi.Rd
|
|
get_required_reproduction.Rd
|
|
get_size_range_array.Rd
|
|
get_time_elements.Rd
|
|
idxFinalT.Rd
|
|
indicator_functions.Rd
|
|
initialN-set.Rd
|
|
initialNOther-set.Rd
|
|
initialNResource-set.Rd
|
|
initial_effort.Rd
|
|
inter.Rd
|
|
knife_edge.Rd
|
|
l2w.Rd
|
|
log_breaks.Rd
|
|
lognormal_pred_kernel.Rd
|
|
matchBiomasses.Rd
|
|
matchGrowth.Rd
|
|
matchNumbers.Rd
|
|
matchYields.Rd
|
|
mizer-package.Rd
|
|
mizerEGrowth.Rd
|
|
mizerERepro.Rd
|
|
mizerEReproAndGrowth.Rd
|
|
mizerEncounter.Rd
|
|
mizerFMort.Rd
|
|
mizerFMortGear.Rd
|
|
mizerFeedingLevel.Rd
|
|
mizerMort.Rd
|
|
mizerPredMort.Rd
|
|
mizerPredRate.Rd
|
|
mizerRDI.Rd
|
|
mizerRates.Rd
|
|
mizerResourceMort.Rd
|
|
needs_upgrading.Rd
|
|
newCommunityParams.Rd
|
|
newMultispeciesParams.Rd
|
|
newSingleSpeciesParams.Rd
|
|
newTraitParams.Rd
|
|
noRDD.Rd
|
|
plotBiomass.Rd
|
|
plotBiomassObservedVsModel.Rd
|
|
plotDataFrame.Rd
|
|
plotDiet.Rd
|
|
plotFMort.Rd
|
|
plotFeedingLevel.Rd
|
|
plotGrowthCurves.Rd
|
|
plotM2.Rd
|
|
plotMizerSim.Rd
|
|
plotPredMort.Rd
|
|
plotSpectra.Rd
|
|
plotYield.Rd
|
|
plotYieldGear.Rd
|
|
plotYieldObservedVsModel.Rd
|
|
plotting_functions.Rd
|
|
power_law_pred_kernel.Rd
|
|
project.Rd
|
|
projectToSteady.Rd
|
|
project_simple.Rd
|
|
reexports.Rd
|
|
removeSpecies.Rd
|
|
renameSpecies.Rd
|
|
resource_constant.Rd
|
|
resource_logistic.Rd
|
|
resource_params.Rd
|
|
resource_semichemostat.Rd
|
|
saveParams.Rd
|
|
scaleModel.Rd
|
|
setBevertonHolt.Rd
|
|
setColours.Rd
|
|
setComponent.Rd
|
|
setExtMort.Rd
|
|
setFishing.Rd
|
|
setInitialValues.Rd
|
|
setInteraction.Rd
|
|
setMaxIntakeRate.Rd
|
|
setMetabolicRate.Rd
|
|
setMetadata.Rd
|
|
setParams.Rd
|
|
setPredKernel.Rd
|
|
setRateFunction.Rd
|
|
setReproduction.Rd
|
|
setResource.Rd
|
|
setRmax.Rd
|
|
setSearchVolume.Rd
|
|
set_community_model.Rd
|
|
set_multispecies_model.Rd
|
|
set_species_param_default.Rd
|
|
set_trait_model.Rd
|
|
sigmoid_length.Rd
|
|
sigmoid_weight.Rd
|
|
species_params.Rd
|
|
steady.Rd
|
|
steadySingleSpecies.Rd
|
|
summary-MizerParams-method.Rd
|
|
summary-MizerSim-method.Rd
|
|
summary_functions.Rd
|
|
truncated_lognormal_pred_kernel.Rd
|
|
upgradeParams.Rd
|
|
upgradeSim.Rd
|
|
validGearParams.Rd
|
|
validParams.Rd
|
|
validSpeciesParams.Rd
|
|
valid_species_arg.Rd
|
|
w.Rd
|