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CMakeLists.txt
alignment.cpp
bitvector.cpp
cmd.cpp
index.cpp
indexdb.cpp
izlib.cpp
kseq_load.cpp
kvdb.cpp
main.cpp
minoccur.cpp
options.cpp
otumap.cpp
output.cpp
paralleltraversal.cpp
processor.cpp
read.cpp
read_control.cpp
readfeed.cpp
readstats.cpp
references.cpp
refstats.cpp
report.cpp
report_biom.cpp
report_blast.cpp
report_denovo.cpp
report_fastx.cpp
report_fx_base.cpp
report_fx_other.cpp
report_sam.cpp
ssw.c
ssw_example.c
summary.cpp
traverse_bursttrie.cpp
util.cpp
writer.cpp