Birdsong brain data imaging package (birdbrain)¶

by Tim Sainburg & Marvin Thielk

Instructions¶

Everything here runs on Jupyter notebooks. You can view them online and interactively using Binder, or locally using pip install birdbrain, and downloading the GitHub repository
This is the index page, where by running the cells below, you will find all of the example notebooks for plotting brain data.
Most of the examples were produced for the European starling dataset but should work for the canary, bat, pigeon, and finch datasets as well. I reccomend taking a look through the starling dataset to see if there's anything you want to try in the other species.
If anything is not working properly - raise an issue on the GitHub page.

In [27]:

from IPython.display import Markdown
from glob import glob

Markdown(
    "\n".join(
        [
            '\n'.join(['### ' + species] + [
                "-  <a href='{1}' target='_blank'>{0}</a>".format(
                    x[9:-6].replace("_", " "), x)
                for x in sorted(glob("notebooks/"+loc+"/*.ipynb"))
            ]) for species, loc in [['European starling', 'starling'], 
                                    ['Canary', 'canary'],
                                   ['Mustached bat', 'mustached_bat'],
                                   ['Pigeon', 'pigeon'],
                                   ['Zebra finch', 'zebra_finch']]
        ]
    )
)

Birdsong brain data imaging package (birdbrain)¶

Instructions¶

European starling¶

Canary¶

Mustached bat¶

Pigeon¶

Zebra finch¶