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..
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.gitignore
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Makefile
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Recipe 17.1 - A minimal tree-seq model.txt
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Recipe 17.10 - Adding a neutral burn-in after simulation with recapitation I.txt
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Recipe 17.10 - Adding a neutral burn-in after simulation with recapitation II.py
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Recipe 17.2 - Overlaying neutral mutations.py
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Recipe 17.3 - Simulation conditional upon fixation of a sweep, preserving ancestry I.txt
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Recipe 17.3 - Simulation conditional upon fixation of a sweep, preserving ancestry II.txt
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Recipe 17.4 - Detecting the dip in diversity (analyzing tree heights in Python) I.txt
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Recipe 17.4 - Detecting the dip in diversity (analyzing tree heights in Python) II.py
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Recipe 17.5 - Mapping admixture (analyzing ancestry in Python) I.txt
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Recipe 17.5 - Mapping admixture (analyzing ancestry in Python) II.py
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Recipe 17.7 - Analyzing selection coefficients in Python with tskit I.txt
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Recipe 17.7 - Analyzing selection coefficients in Python with tskit II.py
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Recipe 17.8 - Starting a hermaphroditic WF model with a coalescent history I.py
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Recipe 17.8 - Starting a hermaphroditic WF model with a coalescent history II.txt
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Recipe 17.8 - Starting a hermaphroditic WF model with a coalescent history III.py
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Recipe 17.9 - Starting a sexual nonWF model with a coalescent history I.py
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Recipe 17.9 - Starting a sexual nonWF model with a coalescent history II.txt
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Recipe 18.13 - Tree-sequence recording and nucleotide-based models I.txt
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Recipe 18.13 - Tree-sequence recording and nucleotide-based models II.py
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Recipe 18.13 - Tree-sequence recording and nucleotide-based models III.py
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check_trees.py
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